Repositories list

• myersresearchgroup.github.io

  Public
  Myers Research Group's official webpage

  synthetic-biologyacademiaresearch-group

  TeX

  •

  MIT License

  •9•9•27•4•Updated Jan 8, 2025Jan 8, 2025

• PUDU

  Public
  Protocol Unified Design Unit

  Python

  •

  MIT License

  •1•0•0•0•Updated Jan 7, 2025Jan 7, 2025

• XDC_Server

  Public
  A Python Flask server that converts Excel files into SBOL and uploads it into SBH and FJ

  Python

  •

  MIT License

  •0•0•5•0•Updated Dec 18, 2024Dec 18, 2024

• SynBioSuite

  Public
  JavaScript

  •0•2•19•0•Updated Dec 18, 2024Dec 18, 2024

• iBioSim

  Public
  iBioSim is a computer-aided design (CAD) tool aimed for the modeling, analysis, and design of genetic circuits. It is capable of importing and exporting models specified using the Systems Biology Markup Language (SBML). iBioSim also supports the Synthetic Biology Open Language (SBOL), an emerging standard for information exchange in synthetic bi…

  Java

  •

  Apache License 2.0

  •21•55•302•1•Updated Nov 27, 2024Nov 27, 2024

• UCF2SBOL

  Public
  Java

  •1•0•1•1•Updated Nov 20, 2024Nov 20, 2024

• SeqImprove

  Public
  JavaScript

  •0•1•19•0•Updated Oct 23, 2024Oct 23, 2024

• Freezer_Duck

  Public
  -80 sensor that sends email warnings when temperature rises.

  MIT License

  •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• OpenTrons_OT2_Protocols

  Public
  The genetic logic lab's Opentrons protocols

  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Aug 2, 2024Aug 2, 2024

• iBioSim-API-Connector

  Public
  JavaScript

  •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

• RobustnessPrediction

  Public
  This repository contains the models and results presented in the paper: Evaluating the Contribution of Model Complexity in Predicting Robustness in Synthetic Genetic Circuits

  MIT License

  •0•0•0•0•Updated Nov 15, 2023Nov 15, 2023

• Shai-et-al-Supporting-Information

  Public
  This repository contains the data-files and scripts necessary to reproduce the results of the "Investigating And Modeling the Factors that Effects the Performance of Genetic Circuits" journal article.

  Python

  •

  Apache License 2.0

  •1•1•0•0•Updated Oct 11, 2023Oct 11, 2023

• iBioSim-API

  Public
  An API for the Java-based synthetic biology simulation tool, iBioSim.

  apisimulationsynthetic-biology

  JavaScript

  •0•0•0•0•Updated Nov 1, 2022Nov 1, 2022

• bioSimPortal

  Public
  Flask API to facilitate communication between SBOLCanvas and iBioSim

  Python

  •

  Apache License 2.0

  •2•0•0•0•Updated Jun 24, 2022Jun 24, 2022

• reb2sac

  Public
  SBML Abstraction and Analysis Tool

  C

  •

  MIT License

  •1•1•9•0•Updated Jun 30, 2021Jun 30, 2021

• Biosimulators_iBioSim

  Public
  Python

  •

  Apache License 2.0

  •2•1•0•0•Updated Jun 26, 2021Jun 26, 2021

• ATACS

  Public
  C

  •

  Apache License 2.0

  •1•10•66•1•Updated Jun 4, 2021Jun 4, 2021

• ibiosim.github.io

  Public
  CSS

  •

  MIT License

  •1•0•4•0•Updated May 30, 2020May 30, 2020

• AddGene2SBOL

  Public
  Java

  •0•0•0•0•Updated Apr 20, 2019Apr 20, 2019

• iGEM2SBOL

  Public
  Java

  •0•0•0•0•Updated Apr 20, 2019Apr 20, 2019

• Verilog2LPN

  Public
  A compiler for asynchronous Verilog to labeled Petri nets

  ANTLR

  •

  MIT License

  •0•0•1•0•Updated Jan 7, 2019Jan 7, 2019

• LEMA

  Public
  Java

  •

  Apache License 2.0

  •0•0•67•0•Updated Jul 7, 2018Jul 7, 2018

• GeneNet

  Public
  Genetic Network Learn Tool

  C++

  •

  MIT License

  •0•1•3•0•Updated Jan 21, 2018Jan 21, 2018

• s2lpn

  Public
  Compiler from assembly files to labelled Petri nets

  C

  •

  MIT License

  •0•0•4•0•Updated Jan 3, 2017Jan 3, 2017

• webpage

  Public
  0•0•2•0•Updated Dec 23, 2016Dec 23, 2016

• Core

  Public
  0•0•57•0•Updated Nov 7, 2016Nov 7, 2016

• Books

  Public
  Issue tracker for errors in my textbooks

  0•0•10•0•Updated Oct 17, 2016Oct 17, 2016