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    59 repositories

    • SlicerCochlea

      Public
      Multi-modal cochlea Images registration, segmentation and analysis
      Python
      •5•16•2•0•Updated Feb 10, 2026Feb 10, 2026

    • SlicerCervicalSpine

      Public
      Python
      •5•9•5•0•Updated Apr 23, 2024Apr 23, 2024

    • ITKElastix

      Public
      An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images
      TypeScript
      •
      Apache License 2.0
      •27•0•0•0•Updated Dec 6, 2023Dec 6, 2023

    • TotalSegmentator

      Public
      Tool for robust segmentation of >100 important anatomical structures in CT images
      Python
      •
      Apache License 2.0
      •403•1•0•0•Updated Nov 21, 2023Nov 21, 2023

    • SlicerTotalSegmentator

      Public
      Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model
      Python
      •
      Apache License 2.0
      •32•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • nnUNet

      Public
      Python
      •
      Apache License 2.0
      •2.3k•0•0•0•Updated Oct 27, 2023Oct 27, 2023

    • nnDetection

      Public
      nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It i…
      Python
      •
      Apache License 2.0
      •119•0•0•0•Updated Sep 18, 2023Sep 18, 2023

    • YOLOv8-Medical-Imaging

      Public
      This project uses YOLOv8 to perform tasks like classification, detection, and segmentation in medical images through a user-friendly interface.
      Python
      •25•0•0•0•Updated Sep 7, 2023Sep 7, 2023

    • BezierInfo-2

      Public
      The development repo for the Primer on Bézier curves, https://pomax.github.io/bezierinfo
      HTML
      •
      Other
      •299•0•0•0•Updated Aug 15, 2023Aug 15, 2023

    • UniverSeg

      Public
      UniverSeg: Universal Medical Image Segmentation
      Python
      •
      Apache License 2.0
      •57•0•0•0•Updated Jul 15, 2023Jul 15, 2023

    • MedicalDataAugmentationTool-CellTracking

      Public
      Python
      •
      GNU General Public License v3.0
      •8•0•0•0•Updated Mar 24, 2023Mar 24, 2023

    • DeepReg

      Public
      Medical image registration using deep learning
      Python
      •
      Apache License 2.0
      •85•0•0•0•Updated Dec 15, 2022Dec 15, 2022

    • SlicerNotebooks

      Public
      Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •29•0•0•0•Updated Sep 20, 2022Sep 20, 2022

    • VisSimData

      Public
      models and sample datasets needed for Slicer VisSim extensions
      0•0•0•0•Updated Sep 20, 2022Sep 20, 2022

    • SlicerSegmentationRecipes

      Public
      Recipes for common medical image segmentation tasks using 3D Slicer
      HTML
      •
      MIT License
      •7•0•0•0•Updated Jul 26, 2022Jul 26, 2022

    • Unsupervised-Domain-Adaptation-Framework-for-Vestibular-Schwannoma-and-Cochlea-Segmentation

      Public
      An improved framework that performs domain adaptation on Vestibular Schwannomas and cochlea segmentation
      Jupyter Notebook
      •2•0•0•0•Updated Jul 11, 2022Jul 11, 2022

    • cochlea_segmentation_docker_monai

      Public
      Python
      •1•0•0•0•Updated May 17, 2022May 17, 2022

    • ADLReg

      Public
      Our(team: winter) solutions for MICCAI Learn2Reg 2021.
      Python
      •3•0•0•0•Updated May 8, 2022May 8, 2022

    • MedicalDataAugmentationTool-HeatmapUncertainty

      Public
      Python
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated Apr 22, 2022Apr 22, 2022

    • abdominal_registration

      Public
      Deep learning based registration for Learn2Reg Challenge (Task 3 : CT Abdominal)
      Python
      •6•0•0•0•Updated Dec 6, 2021Dec 6, 2021

    • DeepLearning4All

      Public archive
      Jupyter Notebook
      •5•5•0•0•Updated Nov 5, 2021Nov 5, 2021

    • ElastixModelZoo

      Public
      Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix
      Python
      •37•0•0•0•Updated Oct 11, 2021Oct 11, 2021

    • MedicalDataAugmentationTool

      Public
      Python
      •
      GNU General Public License v3.0
      •48•0•0•0•Updated Oct 4, 2021Oct 4, 2021

    • MutualInformationTutorial

      Public
      A simple tutorial of mutual information for images
      Jupyter Notebook
      •2•3•0•0•Updated Sep 2, 2021Sep 2, 2021

    • ImageRegistrationTutorial

      Public
      This project is to help students and researchers to learn the theory of medical image registration in a simple and practical way. I will try to explain the math…
      imageinformationmedical
      imageinformationmedicalregistrationstochasticgradientitkoptimisationmutualdescent
      Jupyter Notebook
      •
      MIT License
      •9•35•1•0•Updated Sep 1, 2021Sep 1, 2021

    • verse

      Public
      Everything about the 'Large Scale Vertebrae Segmentation Challenge' @ MICCAI 2019-2020
      Jupyter Notebook
      •
      MIT License
      •61•0•0•0•Updated Jul 23, 2021Jul 23, 2021

    • transforms3d

      Public
      3 dimensional spatial transformations
      Python
      •
      Other
      •85•0•0•0•Updated Jun 20, 2021Jun 20, 2021

    • Unpaired_MR_to_CT_Image_Synthesis

      Public
      Whole-body MR to CT image mapping
      Python
      •
      GNU Affero General Public License v3.0
      •12•0•0•0•Updated Apr 29, 2021Apr 29, 2021

    • FaceDetection

      Public
      Face Detection using ViolaJones on the CBCL Face Database
      Python
      •15•0•0•0•Updated Feb 7, 2021Feb 7, 2021

    • MedicalDataAugmentationTool-VerSe

      Public
      Python
      •
      GNU General Public License v3.0
      •83•0•0•0•Updated Dec 21, 2020Dec 21, 2020