Repositories list

• dashboards

  Public
  TypeScript

  •

  GNU Affero General Public License v3.0

  •00 forks•77 stars•106106 issues•1111 pull requests•Updated Apr 22, 2026Apr 22, 2026

• LAPIS

  Public

  GenSpectrum/LAPIS’s past year of commit activity
  An API, a query engine, and a database schema for genomic sequences; currently with a focus on SARS-CoV-2

  researchgenomicsepidemiology+ 2

  researchgenomicsepidemiologycovid-19sars-cov-2

  Kotlin

  •

  GNU Affero General Public License v3.0

  •66 forks•3131 stars•6565 issues•77 pull requests•Updated Apr 22, 2026Apr 22, 2026

• influenza-override-groups

  Public
  This directory creates a JSON that contains the mapping of Influenza genbank assemblies to segment accessions

  Python

  •00 forks•00 stars•66 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• LAPIS-SILO

  Public
  High-performance analytical database for sequence alignment data

  C++

  •

  GNU Affero General Public License v3.0

  •55 forks•1818 stars•9898 issues•66 pull requests•Updated Apr 20, 2026Apr 20, 2026

• dashboard-components

  Public
  TypeScript

  •

  GNU Affero General Public License v3.0

  •00 forks•44 stars•6767 issues•66 pull requests•Updated Apr 20, 2026Apr 20, 2026

• nextclade-datasets

  Public
  00 forks•00 stars•00 issues•11 pull request•Updated Apr 19, 2026Apr 19, 2026

• cov-spectrum-website

  Public
  A web platform to detect and analyze variants of SARS-CoV-2

  researchgenomicsepidemiology+ 3

  researchgenomicsepidemiologycovid-19sars-cov-2cov-spectrum

  TypeScript

  •

  GNU General Public License v3.0

  •1515 forks•6161 stars•8484 issues•1212 pull requests•Updated Apr 16, 2026Apr 16, 2026

• evobench

  Public
  Tool to produce, store and analyze performance data of SILO and perhaps later LAPIS?

  Rust

  •

  Other

  •11 fork•11 star•1111 issues•11 pull request•Updated Apr 14, 2026Apr 14, 2026

• LAPIS-SILO-e2e

  Public

  GenSpectrum/LAPIS-SILO-e2e’s past year of commit activity
  TypeScript

  •11 fork•11 star•1010 issues•11 pull request•Updated Apr 13, 2026Apr 13, 2026

• silo-benchmark-ci

  Public
  SILO benchmarking CI system setup

  Shell

  •00 forks•00 stars•11 issue•00 pull requests•Updated Feb 25, 2026Feb 25, 2026

• api-query

  Public
  Somewhat generic utility for querying some API(s)

  Rust

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 14, 2025Dec 14, 2025

• locksafely

  Public
  Better locks via lock files for shell scripts

  Shell

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 20, 2025Nov 20, 2025

• docker-autoheal

  Public
  Monitor and restart unhealthy docker containers.

  Shell

  •

  MIT License

  •257257 forks•00 stars•00 issues•00 pull requests•Updated Nov 19, 2025Nov 19, 2025

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 21, 2025Sep 21, 2025

• lineage-definitions

  Public
  Python

  •00 forks•00 stars•11 issue•00 pull requests•Updated Sep 15, 2025Sep 15, 2025

• ingest

  Public
  Kotlin

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 2, 2025Sep 2, 2025

• silo-benchmark-runner

  Public archive
  Running evobench benchmarks on LAPIS-SILO

  00 forks•00 stars•00 issues•00 pull requests•Updated Jul 7, 2025Jul 7, 2025

• WISE-mut-freq-data-uploader

  Public
  This repo includes a script to upload waste water virus mutation frequency data, produced by pangolin automation running v-pipe.

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 17, 2025Apr 17, 2025

• firewall

  Public
  Rust

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 15, 2025Apr 15, 2025

• loculus-addons

  Public
  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2025Jan 27, 2025

• cov-spectrum-server

  Public
  The server part of CoV-Spectrum

  cov-spectrum

  cov-spectrum

  Kotlin

  •

  GNU General Public License v3.0

  •33 forks•66 stars•11 issue•33 pull requests•Updated Jan 18, 2025Jan 18, 2025

• genspectrum-homepage

  Public archive
  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 21, 2024Dec 21, 2024

• loculus-config

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 20, 2024Sep 20, 2024

• lapisR

  Public
  R

  •00 forks•22 stars•11 issue•00 pull requests•Updated Apr 4, 2024Apr 4, 2024

• genspectrum-chat-conversations

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 19, 2023Jun 19, 2023

• discussions

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2023Apr 9, 2023

• cov-spectrum-ppretty

  Public
  R

  •

  GNU General Public License v3.0

  •00 forks•11 star•1010 issues•00 pull requests•Updated Dec 17, 2022Dec 17, 2022

• mpox-spectrum-website

  Public archive
  TypeScript

  •11 fork•44 stars•88 issues•00 pull requests•Updated Dec 17, 2022Dec 17, 2022

• cov-spectrum-docs

  Public archive
  cov-spectrum

  cov-spectrum

  11 fork•22 stars•00 issues•00 pull requests•Updated Nov 3, 2021Nov 3, 2021