Repositories list

• DFI_Cdiff_metagenomics

  Public
  HTML

  •0•0•0•0•Updated May 30, 2025May 30, 2025

• DFI_Bacteroidales

  Public
  data and code repo for the bacteroidales paper at DFI Uchicago

  R

  •3•0•0•0•Updated May 13, 2025May 13, 2025

• DFILiverDiseaseMicrobiome2

  Public
  data and code repo for the follow-up Liver Disease Micriobiome paper at DFI Uchicago

  R

  •0•0•0•0•Updated May 13, 2025May 13, 2025

• Medical_Intensive_Care_Unit

  Public
  Code and Data from the University of Chicago Medical Intensive Care Unit (MICU) Study

  bioinformaticsrmedical-intensive-care-unit

  HTML

  •

  MIT License

  •0•0•0•0•Updated Mar 4, 2025Mar 4, 2025

• SARS-CoV-2

  Public
  Code and Data from our SARS-CoV-2 manuscript

  bioinformaticsrsars-cov-2

  R

  •

  MIT License

  •1•2•0•0•Updated Jan 3, 2024Jan 3, 2024

• Microbiome_Liver_Transplant

  Public
  Code and Data from our Microbiome in Liver Transplant Infection Manuscript

  bioinformaticsrinfection+ 1liver

  TeX

  •

  MIT License

  •1•0•0•0•Updated Jan 3, 2024Jan 3, 2024

• DFILiverDiseaseMicrobiome

  Public
  R

  •2•0•0•0•Updated Jul 18, 2023Jul 18, 2023