The Blue Brain Project

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361 repositories

neuroagent
Public
LLM agent made to communicate with different neuroscience related tools
Python
•
Apache License 2.0
•0•8•0•1•Updated Dec 20, 2024Dec 20, 2024
platform-docs
Public
Apache License 2.0
•0•2•0•0•Updated Dec 19, 2024Dec 19, 2024
Molsys-transcriptomic-atlas
Public
This repository provides code to generate a transcriptomic atlas and its mapping to TME types.
Jupyter Notebook
•
Apache License 2.0
•0•0•0•0•Updated Dec 19, 2024Dec 19, 2024
synthesis-workflow
Public
Luigi workflow for neuronal synthesis
Python
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Apache License 2.0
•0•0•0•1•Updated Dec 18, 2024Dec 18, 2024
open-data-registry
Public
A registry of publicly available datasets on AWS
Python
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Apache License 2.0
•931•1•0•0•Updated Dec 18, 2024Dec 18, 2024
nexus-forge
Public
Building and Using Knowledge Graphs made easy
data-science rdf knowledge-graph json-ld data-management shacl knowledge-engineering knowledgegraph
Python
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GNU Lesser General Public License v3.0
•18•41•49•7•Updated Dec 18, 2024Dec 18, 2024
spack
Public
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
Python
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Other
•2.3k•9•2•41•Updated Dec 18, 2024Dec 18, 2024
region-grower
Public
Neuronal synthesis in atlas-based regions
Python
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Apache License 2.0
•0•0•0•0•Updated Dec 18, 2024Dec 18, 2024
nexus-web
Public
Nexus Web is the interface of Blue Brain Nexus
react redux nodejs javascript typescript storybook server-side-rendering nexus
TypeScript
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Apache License 2.0
•8•17•0•1•Updated Dec 17, 2024Dec 17, 2024
spacktainers
Public
Automated container building via AWS Codebuild, based on Spack
docker spack containerization
Dockerfile
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Apache License 2.0
•0•2•1•3•Updated Dec 17, 2024Dec 17, 2024
nmodl-references
Public
nmodl references
C++
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Apache License 2.0
•0•1•0•0•Updated Dec 17, 2024Dec 17, 2024
nmodl
Public
Code Generation Framework For NEURON MODeling Language
hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
C++
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Apache License 2.0
•15•57•167•21•Updated Dec 17, 2024Dec 17, 2024
cortexetl
Public
Jupyter Notebook
•
Apache License 2.0
•0•2•0•0•Updated Dec 16, 2024Dec 16, 2024
core-web-app
Public
Open Brain Platform
neuroscience simulation-neuroscience
TypeScript
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Apache License 2.0
•0•4•0•0•Updated Dec 16, 2024Dec 16, 2024
functionalizer
Public
Create a functional connectome from physical connections between cells
neuroscience in-silico connectome-generation
Python
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Apache License 2.0
•0•1•6•1•Updated Dec 16, 2024Dec 16, 2024
BlueRecording
Public
Creates weights files for extracellular recording in neurodamus
experiment circuit
Python
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GNU General Public License v3.0
•0•3•0•0•Updated Dec 13, 2024Dec 13, 2024
axon-synthesis
Public
A package to synthesize artificial axons
morphology neuroscience axon neuroscience-methods
Python
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Apache License 2.0
•0•1•0•0•Updated Dec 13, 2024Dec 13, 2024
ccfv3a-extended-atlas
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Dec 13, 2024Dec 13, 2024
morphology-suite
Public
2•4•0•0•Updated Dec 13, 2024Dec 13, 2024
appositionizer
Public
Detect physical locations for synapses
neuroscience connectome connectome-generation
C++
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Apache License 2.0
•2•1•1•0•Updated Dec 13, 2024Dec 13, 2024
sbo-qa-automation
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Dec 12, 2024Dec 12, 2024
Molsys-MetabolicModel
Public
Jupyter Notebook
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Apache License 2.0
•0•0•0•0•Updated Dec 12, 2024Dec 12, 2024
neurodamus
Public
A BBP Simulation Control application for NEURON
simulation cellular neuron-simulations brain
Python
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Apache License 2.0
•8•10•8•0•Updated Dec 12, 2024Dec 12, 2024
neurodamus-sonata-template
Public
AGS Script
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Apache License 2.0
•0•0•0•0•Updated Dec 11, 2024Dec 11, 2024
nexus
Public
Blue Brain Nexus - A knowledge graph for data-driven science
scala nexus provenance knowledge-graph shacl
Scala
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Apache License 2.0
•73•281•264•0•Updated Dec 11, 2024Dec 11, 2024
synthdb
Public
Python
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Apache License 2.0
•0•0•0•1•Updated Dec 11, 2024Dec 11, 2024
bbp-atlas-pipeline
Public
Set of processing modules that generate annotation volumes, brain region hierarchies, direction vectors, orientations and placement hints, cell density volumes for several cell types, CellComposition of the brain regions.
database atlas
Jupyter Notebook
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Apache License 2.0
•0•1•0•0•Updated Dec 10, 2024Dec 10, 2024
HighFive
Public
HighFive - Header-only C++ HDF5 interface
C++
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Boost Software License 1.0
•162•697•46•1•Updated Dec 10, 2024Dec 10, 2024
atlas-densities
Public
Tools to compute densities in the context of brain atlases.
build atlas
Python
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Apache License 2.0
•8•4•8•6•Updated Dec 10, 2024Dec 10, 2024
aws-parallel-cluster
Public
Shell
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Apache License 2.0
•0•0•0•0•Updated Dec 10, 2024Dec 10, 2024