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    • scrnaseq

      Public
      Collection of public single-cell RNA-seq datasets
      Python
      MIT License
      0101Updated Nov 18, 2024Nov 18, 2024
    • Python implementation of the BiocFileCache R package
      Python
      MIT License
      2111Updated Nov 18, 2024Nov 18, 2024
    • rds2py

      Public
      Read RDS files, in Python
      Python
      MIT License
      31501Updated Nov 18, 2024Nov 18, 2024
    • mopsy

      Public
      Matrix operations
      Python
      MIT License
      1001Updated Nov 18, 2024Nov 18, 2024
    • celldex

      Public
      Collection of reference cell type datasets
      Python
      MIT License
      0001Updated Nov 18, 2024Nov 18, 2024
    • Container class for single-cell experiments
      Python
      MIT License
      1611Updated Nov 18, 2024Nov 18, 2024
    • cellarr

      Public
      Store collections of experimental data based on TileDB
      Python
      MIT License
      1251Updated Nov 18, 2024Nov 18, 2024
    • TileDB backed delayed arrays for Python
      Python
      MIT License
      0001Updated Nov 18, 2024Nov 18, 2024
    • Container class for genomic experiments
      Python
      MIT License
      2541Updated Nov 18, 2024Nov 18, 2024
    • Container class to represent and manage multi-omics genomic experiments
      Python
      MIT License
      1501Updated Nov 18, 2024Nov 18, 2024
    • IRanges

      Public
      IRanges in Python
      Python
      MIT License
      0332Updated Nov 18, 2024Nov 18, 2024
    • HDF5Array

      Public
      HDF5 File-backed arrays for Python
      Python
      MIT License
      0001Updated Nov 18, 2024Nov 18, 2024
    • Container class to represent genomic locations and support genomic analysis
      Python
      MIT License
      417111Updated Nov 18, 2024Nov 18, 2024
    • Python
      MIT License
      0113Updated Nov 18, 2024Nov 18, 2024
    • Biocborn

      Public
      bioc objects + seaborn
      Python
      MIT License
      0101Updated Nov 18, 2024Nov 18, 2024
    • BiocFrame

      Public
      Bioconductor-like data frames
      Python
      MIT License
      3401Updated Nov 18, 2024Nov 18, 2024
    • .github

      Public
      0000Updated Oct 29, 2024Oct 29, 2024
    • BiocUtils

      Public
      Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.
      Python
      MIT License
      0011Updated Oct 28, 2024Oct 28, 2024
    • DelayedArrays, in Python
      Python
      MIT License
      0010Updated Oct 23, 2024Oct 23, 2024
    • Jupyter Notebook
      1000Updated Jul 24, 2024Jul 24, 2024
    • singler

      Public
      Python bindings to the SingleR algorithm
      Python
      MIT License
      0610Updated Jun 27, 2024Jun 27, 2024
    • mattress

      Public
      Interface to tatami representations
      Python
      MIT License
      0010Updated Jun 27, 2024Jun 27, 2024
    • tutorial

      Public
      tutorial for all bioconductor representations in Python
      TeX
      0100Updated Mar 15, 2024Mar 15, 2024
    • scranpy

      Public
      Single-cell data analysis, from C++ to Python
      Python
      MIT License
      0841Updated Feb 5, 2024Feb 5, 2024
    • generics

      Public archive
      BiocPy generics
      Python
      MIT License
      0002Updated Nov 20, 2023Nov 20, 2023
    • 0110Updated Oct 31, 2023Oct 31, 2023
    • Assorted C++ headers, vendored into a Python package.
      Python
      MIT License
      0000Updated Sep 22, 2023Sep 22, 2023
    • cpptypes

      Public
      Automatically generate wrappers for ctypes with C++
      Python
      MIT License
      0000Updated Sep 8, 2023Sep 8, 2023
    • mattress-broken

      Public archive
      Interface to tatami representations
      Python
      MIT License
      0010Updated Jul 27, 2023Jul 27, 2023
    • BiocPy

      Public
      Interface to all BiocPy packages
      Python
      MIT License
      1200Updated Jul 24, 2023Jul 24, 2023