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    30 repositories

    • scrnaseq

      Public
      Collection of public single-cell RNA-seq datasets
      Python
      •
      MIT License
      •0•1•0•1•Updated Nov 18, 2024Nov 18, 2024

    • pyBiocFileCache

      Public
      Python implementation of the BiocFileCache R package
      cache
      Python
      •
      MIT License
      •2•1•1•1•Updated Nov 18, 2024Nov 18, 2024

    • rds2py

      Public
      Read RDS files, in Python
      pythonr
      Python
      •
      MIT License
      •3•15•0•1•Updated Nov 18, 2024Nov 18, 2024

    • mopsy

      Public
      Matrix operations
      numpymatrixscipy
      Python
      •
      MIT License
      •1•0•0•1•Updated Nov 18, 2024Nov 18, 2024

    • celldex

      Public
      Collection of reference cell type datasets
      single-cell
      Python
      •
      MIT License
      •0•0•0•1•Updated Nov 18, 2024Nov 18, 2024

    • SingleCellExperiment

      Public
      Container class for single-cell experiments
      singlecellexperiment
      Python
      •
      MIT License
      •1•6•1•1•Updated Nov 18, 2024Nov 18, 2024

    • cellarr

      Public
      Store collections of experimental data based on TileDB
      mltiledb
      Python
      •
      MIT License
      •1•2•5•1•Updated Nov 18, 2024Nov 18, 2024

    • TileDBArray

      Public
      TileDB backed delayed arrays for Python
      tiledbdelayedarray
      Python
      •
      MIT License
      •0•0•0•1•Updated Nov 18, 2024Nov 18, 2024

    • SummarizedExperiment

      Public
      Container class for genomic experiments
      summarizedexperiment
      Python
      •
      MIT License
      •2•5•4•1•Updated Nov 18, 2024Nov 18, 2024

    • MultiAssayExperiment

      Public
      Container class to represent and manage multi-omics genomic experiments
      multiassayexperiment
      Python
      •
      MIT License
      •1•5•0•1•Updated Nov 18, 2024Nov 18, 2024

    • IRanges

      Public
      IRanges in Python
      interval-arithmeticiranges
      Python
      •
      MIT License
      •0•3•3•2•Updated Nov 18, 2024Nov 18, 2024

    • HDF5Array

      Public
      HDF5 File-backed arrays for Python
      hdf5delayedarray
      Python
      •
      MIT License
      •0•0•0•1•Updated Nov 18, 2024Nov 18, 2024

    • GenomicRanges

      Public
      Container class to represent genomic locations and support genomic analysis
      genomicranges
      Python
      •
      MIT License
      •4•17•11•1•Updated Nov 18, 2024Nov 18, 2024

    • GenomicArrays

      Public
      mltiledb
      Python
      •
      MIT License
      •0•1•1•3•Updated Nov 18, 2024Nov 18, 2024

    • Biocborn

      Public
      bioc objects + seaborn
      Python
      •
      MIT License
      •0•1•0•1•Updated Nov 18, 2024Nov 18, 2024

    • BiocFrame

      Public
      Bioconductor-like data frames
      dataframe
      Python
      •
      MIT License
      •3•4•0•1•Updated Nov 18, 2024Nov 18, 2024

    • .github

      Public
      0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • BiocUtils

      Public
      Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.
      Python
      •
      MIT License
      •0•0•1•1•Updated Oct 28, 2024Oct 28, 2024

    • DelayedArray

      Public
      DelayedArrays, in Python
      delayedarray
      Python
      •
      MIT License
      •0•0•1•0•Updated Oct 23, 2024Oct 23, 2024

    • BiocWorkshop2024

      Public
      rpythonbioconductorbiocpy
      Jupyter Notebook
      •1•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • singler

      Public
      Python bindings to the SingleR algorithm
      Python
      •
      MIT License
      •0•6•1•0•Updated Jun 27, 2024Jun 27, 2024

    • mattress

      Public
      Interface to tatami representations
      matrixtatami
      Python
      •
      MIT License
      •0•0•1•0•Updated Jun 27, 2024Jun 27, 2024

    • tutorial

      Public
      tutorial for all bioconductor representations in Python
      biocpy
      TeX
      •0•1•0•0•Updated Mar 15, 2024Mar 15, 2024

    • scranpy

      Public
      Single-cell data analysis, from C++ to Python
      Python
      •
      MIT License
      •0•8•4•1•Updated Feb 5, 2024Feb 5, 2024

    • generics

      Public archive
      BiocPy generics
      Python
      •
      MIT License
      •0•0•0•2•Updated Nov 20, 2023Nov 20, 2023

    • developer_guide

      Public
      0•1•1•0•Updated Oct 31, 2023Oct 31, 2023

    • assorthead

      Public
      Assorted C++ headers, vendored into a Python package.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2023Sep 22, 2023

    • cpptypes

      Public
      Automatically generate wrappers for ctypes with C++
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 8, 2023Sep 8, 2023

    • mattress-broken

      Public archive
      Interface to tatami representations
      matrixtatami
      Python
      •
      MIT License
      •0•0•1•0•Updated Jul 27, 2023Jul 27, 2023

    • BiocPy

      Public
      Interface to all BiocPy packages
      biocpy
      Python
      •
      MIT License
      •1•2•0•0•Updated Jul 24, 2023Jul 24, 2023