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    25 repositories

    • training-protein-dynamics-post-translational-modifications

      Public
      Assess protein dynamics & post-translational modifications through ELIXIR Belgium Node services: B2BTools & Scop3P
      TeX
      •
      Other
      •2•0•0•1•Updated Apr 19, 2026Apr 19, 2026

    • usegalaxy-eu-tools

      Public
      List of tools included in https://usegalaxy.eu
      Python
      •
      MIT License
      •156•0•0•0•Updated Apr 1, 2026Apr 1, 2026

    • Scop3P-notebooks

      Public
      Jupyter notebook and ShinyApp version of the Scop3P Toolkit (image: https://hub.docker.com/r/bio2byte/scop3p-toolkit)
      bioinformaticsproteinsprotein-structure
      bioinformaticsproteinsprotein-structureptmugentvubbio2bytecompomics
      HTML
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Mar 27, 2026Mar 27, 2026

    • simsapiper

      Public
      A Nextflow pipeline that creates reliable, structure-informed MSAs of thousands of protein sequences which can supplement structural information from online res…
      Python
      •
      GNU General Public License v3.0
      •1•11•1•0•Updated Mar 26, 2026Mar 26, 2026

    • constava

      Public
      Constava analyzes conformational ensembles calculating conformational state propensities and conformational state variability.
      Python
      •
      Other
      •0•1•0•0•Updated Mar 16, 2026Mar 16, 2026

    • tools-iuc

      Public
      Tool Shed repositories maintained by the Intergalactic Utilities Commission
      HTML
      •
      MIT License
      •507•0•0•0•Updated Mar 14, 2026Mar 14, 2026

    • scop3p-api-client

      Public
      The official Scop3P REST API Python client for retrieving phospho-sites
      Python
      •
      Other
      •0•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.9k•0•0•0•Updated Mar 9, 2026Mar 9, 2026

    • .github

      Public
      Landing repository for the Bio2Byte lab
      0•0•0•0•Updated Mar 5, 2026Mar 5, 2026

    • shiny-web-container

      Public
      Bio2Byte's Shiny Web Container Template
      pythondockernginx
      pythondockernginxrdocker-composeshiny-appsrlang
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 5, 2026Mar 5, 2026

    • biohackathon-eu-2025-group-22

      Public
      BioHackathon Europe 2025 in Berlin - Group 22
      HTML
      •
      MIT License
      •1•1•0•1•Updated Nov 26, 2025Nov 26, 2025

    • tools-iuc-master

      Public archive
      Tool Shed repositories maintained by the Intergalactic Utilities Commission
      HTML
      •
      MIT License
      •507•0•0•0•Updated Sep 18, 2025Sep 18, 2025

    • GPCRchimeraDB

      Public
      Repository of the database GPCRchimeraDB: description at the sequence, structural and biophyiscal level of chimeric and natural GPCRs
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • gpcrchimeradb-docs

      Public
      Read the Docs for GPCRchimeraDB
      1.6k•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • public_notebooks

      Public
      Repository of Jupyter Notebooks created by the Bio2Byte group
      bioinformaticsbiologyproteins
      bioinformaticsbiologyproteinsjupyter-notebookbioinformatics-dataalphafolddynamineagmatadisomineefoldmine
      Jupyter Notebook
      •0•11•0•0•Updated Apr 9, 2025Apr 9, 2025

    • parrot-mps

      Public
      Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic applications.
      Python
      •
      MIT License
      •2•0•0•1•Updated Jan 3, 2025Jan 3, 2025

    • nf-b2btools-shiftcrypt

      Public
      Nextflow pipeline to predict Shiftcrypt values from NEF or NMR-STAR data files
      Python
      •0•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • ortholint

      Public
      A nextflow pipeline that creates (or takes) orthologous groups from gene-called genomes and runs sequence- and structure based QC to remove outliers
      Perl
      •
      MIT License
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • bioenvada

      Public
      A nextflow pipeline to investigate protein adaption to environmental conditions
      Python
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Oct 31, 2024Oct 31, 2024

    • metapredict-mps

      Public
      A machine learning based protein disorder predictor supporting mps
      Python
      •
      MIT License
      •5•0•0•1•Updated Aug 22, 2024Aug 22, 2024

    • bio2byte-mdutils

      Public
      Templates and analysis scripts for MD simulations of post-translationally modified peptides
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 14, 2024May 14, 2024

    • nf-pipelines

      Public
      In this repository we store our shared Nextflow pipelines
      Nextflow
      •0•0•0•0•Updated Apr 19, 2024Apr 19, 2024

    • bio2byte-peptidebuilder

      Public
      A simple Python library to generate model peptides (incl. capping groups and modified residues)
      Python
      •
      MIT License
      •32•1•0•0•Updated Apr 10, 2024Apr 10, 2024

    • structbio

      Public
      Structural Biology course files
      Jupyter Notebook
      •
      Other
      •0•0•0•1•Updated Nov 21, 2023Nov 21, 2023

    • pdb-topology-viewer

      Public
      PDB Topology Viewer
      TypeScript
      •
      Apache License 2.0
      •5•0•0•0•Updated Oct 10, 2023Oct 10, 2023
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