AOIPLab

All

19 repositories

Fixation_GUI
Public
A Fixation Target GUI that uses a secondary monitor as the fixation screen.
Python
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Apache License 2.0
•3•0•0•0•Updated Sep 11, 2025Sep 11, 2025
Eye_Motion_Repair
Public
Code that removes residual distortions due to eye motion from images and videos processed via strip or grid registration.
processing script scanner quad distortion ao removal single aoslo
MATLAB
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GNU General Public License v3.0
•6•1•0•0•Updated Jun 20, 2025Jun 20, 2025
B-COSFIRE-MATLAB
Public
MOVED to https://gitlab.com/nicstrisc/B-COSFIRE-MATLAB. Matlab implementation of the B-COSFIRE filters for detection of curvilinear patterns in images
MATLAB
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BSD 3-Clause "New" or "Revised" License
•2•0•0•0•Updated Jun 19, 2025Jun 19, 2025
ARFS
Public
Input from ARFS to create batch files
processing reference quad automatic selection frame ao aoslo arfs
MATLAB
•2•1•0•0•Updated Jun 5, 2025Jun 5, 2025
Metricks
Public
A repository containing validated coordinate structure measurements. All of these metrics are designed for adaptive optics ophthalmoscope images.
map metrics density subtraction average ao cdc pcd cones aoslo
MATLAB
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GNU General Public License v3.0
•4•2•0•0•Updated Jun 2, 2025Jun 2, 2025
ConeMapper
Public
count mapper cone cells wolf harmening conemapper
MATLAB
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GNU General Public License v3.0
•1•0•0•0•Updated Mar 31, 2025Mar 31, 2025
File_Renaming
Public
Matlab scripts to rename or mask files
grid directory excel rename file name mask masking renaming
MATLAB
•0•0•0•0•Updated Feb 28, 2025Feb 28, 2025
uWFS
Public
Handheld WFS code. Version Forked from WAIVS repo. Originally from the Jonnal lab (CHOIR).
Python
•3•0•0•0•Updated Nov 12, 2024Nov 12, 2024
Szpernal_etal_OCTA_RetinalVascMetrics
Public
Repository containing all scripts used in "Assessing the Sensitivity of OCT-A Retinal Vasculature Metrics" by Szpernal et al.
MATLAB
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GNU General Public License v3.0
•0•0•0•0•Updated Oct 22, 2024Oct 22, 2024
AOAutomontaging
Public
Automontaging for AO images
processing images quad montage ao aoslo montager montaging
HTML
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Other
•7•1•0•0•Updated Aug 27, 2024Aug 27, 2024
OCT_Volume_Viewer
Public
OCT Volume Viewer Application
0•0•0•0•Updated Apr 8, 2024Apr 8, 2024
Matfile_Generator
Public
Creates .mat files to correspond to confocal videos. Used mainly for bin converted avis
quad avi bin mat converted aoslo matfile confocal arfs
MATLAB
•0•0•0•0•Updated Feb 13, 2024Feb 13, 2024
OCT_Thickness_Extractor
Public
Script to extract OCT layer thicknesses based on segmented OCT data.
MATLAB
•0•1•0•0•Updated Dec 4, 2023Dec 4, 2023
OCT-Converter
Public
Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.
Python
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MIT License
•76•0•0•0•Updated Nov 9, 2023Nov 9, 2023
ORA
Public
OCT Reflectivity Analytics
analytics brandon reflectivity ora oct wilk
Java
•2•0•0•0•Updated Sep 11, 2023Sep 11, 2023
Full-Auto-Density-Mapping
Public
A repository that implements a fully automated approach for estimating density, and spacing both in single images and in montages.
MATLAB
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Apache License 2.0
•1•0•0•0•Updated May 24, 2023May 24, 2023
Circularity_vs_Roundness_FAZ
Public
Repository containing all scripts used in "The Shape of the Foveal Avascular Zone: When a Circle Isn't Round" by Grieshop et al.
simulation circle round circularity faz roundness
MATLAB
•0•0•0•0•Updated Mar 2, 2023Mar 2, 2023
ConeSegmentation
Public
A software package for segmenting the boundaries of cone photoreceptors in non-confocal adaptive optics images such as split detection.
cone segmentation ao tam johnny
C++
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Other
•1•0•0•0•Updated Mar 12, 2022Mar 12, 2022
AO-PIPELINE
Public
Adaptive optics scanning light ophthalmoscope image processing pipeline
processing pipeline pipe ao aoslo
HTML
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GNU General Public License v3.0
•2•0•0•0•Updated May 24, 2021May 24, 2021