added ensembl data to unit test script

openvax · Feb 13, 2024 · 347e74b · 347e74b
1 parent e800e71
commit 347e74b
Showing 1 changed file with 8 additions and 0 deletions.
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -40,6 +40,14 @@ jobs:
       - name: Run default linting script
         run: |
           ./lint.sh
+      - name: Download Ensembl data
+        run: |
+          echo "Before installing Ensembl releases" && df -h
+          pyensembl install --release 87 --species homo_sapiens --custom-mirror https://github.com/openvax/ensembl-data/releases/download/GRCh38.87/
+          pyensembl install --release 75 --species human --custom-mirror https://github.com/openvax/ensembl-data/releases/download/GRCh37.75/
+          pyensembl install --release 102 --species mouse --custom-mirror https://github.com/openvax/ensembl-data/releases/download/GRCm38.102/
+          echo "After installing Ensembl releases" && df -h
+
       - name: Run unit tests
         run: |
           ./test.sh