fix(study_locus_valiation): ensure the the transQtlColumn is missing #990
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✨ Context
The dataproc job for
study_locus_valiation
step has failed due to the duplicatedisTransQtl
column.This can happen when we read the dataset from the parquet file that will automatically align it to existing schema, resulting in the addition of the empty column, which will result in
SchemaValidationError
when validating the dataset before writing after joining it with the lookup index containingisTransQtl
column.🛠 What does this PR implement
isTransQtl
column is dropped (provided it exists) when running the methodStudyLocus.flag_trans_qtls
🙈 Missing
🚦 Before submitting
dev
branch?make test
)?uv run pre-commit run --all-files
)?