feat: debug gha

.github/workflows/artifact.yml

@@ -22,6 +22,11 @@ jobs:
       - name: "Checkout"
         uses: "actions/checkout@v3"
 
+      - name: "Make check"
+        run: |
+          make check
+          make build
+
       - name: "auth"
         uses: "google-github-actions/auth@v2"
         with:

.gitignore

@@ -15,3 +15,4 @@ site/
 wandb/
 hail*.log
 .python-version
+.idea

pyproject.toml

@@ -3,30 +3,27 @@ name = "gentropy"
 # !! version is managed by semantic_release
 version = "0.0.0"
 description = "Open Targets python framework for post-GWAS analysis"
-authors = [
-  { name = "Open Targets core team", email = "[email protected]" }
-]
+authors = [{ name = "Open Targets core team", email = "[email protected]" }]
 license = "Apache-2.0"
 readme = "README.md"
-documentation = "https://opentargets.github.io/gentropy/"
 requires-python = ">=3.10, <3.13"
 dependencies = [
-    "pyspark (>=3.5.0, <3.6)",
-    "hail (>=0.2.133, <0.3.0)",
-    "scipy (>=1.11.4, <1.12.0)",
-    "hydra-core (>=1.3.2, <1.4.0)",
-    "pyliftover (>=0.4.1, <0.5.0)",
-    "numpy (>=1.26.4, <1.27.0)",
-    "wandb (>=0.19.4, <0.20.0)",
-    "omegaconf (>=2.3.0, <2.4.0)",
-    "typing-extensions (>=4.12.2, <4.13.0)",
-    "scikit-learn (>=1.6.1, <1.7.0)",
-    "pandas[gcp,parquet] (>=2.2.3, <2.3.0)",
-    "skops (>=0.11.0, <0.12.0)",
-    "shap (>=0.46, <0.47)",
-    "matplotlib (>=3.10.0, <3.11.0)",
-    "google-cloud-secret-manager (>=2.12.6, <2.13.0)",
-    "google-cloud-storage (>=2.14.0, <2.15.0)"
+  "pyspark (>=3.5.0, <3.6)",
+  "hail (>=0.2.133, <0.3.0)",
+  "scipy (>=1.11.4, <1.12.0)",
+  "hydra-core (>=1.3.2, <1.4.0)",
+  "pyliftover (>=0.4.1, <0.5.0)",
+  "numpy (>=1.26.4, <1.27.0)",
+  "wandb (>=0.19.4, <0.20.0)",
+  "omegaconf (>=2.3.0, <2.4.0)",
+  "typing-extensions (>=4.12.2, <4.13.0)",
+  "scikit-learn (>=1.6.1, <1.7.0)",
+  "pandas[gcp,parquet] (>=2.2.3, <2.3.0)",
+  "skops (>=0.11.0, <0.12.0)",
+  "shap (>=0.46, <0.47)",
+  "matplotlib (>=3.10.0, <3.11.0)",
+  "google-cloud-secret-manager (>=2.12.6, <2.13.0)",
+  "google-cloud-storage (>=2.14.0, <2.15.0)",
 ]
 classifiers = [
   "Programming Language :: Python :: 3.10",
@@ -44,41 +41,41 @@ gentropy = "gentropy.cli:main"
 
 [dependency-groups]
 docs = [
-    "mkdocs >=1.5.3, <1.6.0",
-    "mkdocstrings-python >=1.12.2, <1.13.0",
-    "mkdocs-material",
-    "mkdocs-section-index >=0.3.4, <0.4.0",
-    "mkdocs-git-revision-date-localized-plugin >=1.2.2, <1.4.0",
-    "mkdocs-autolinks-plugin >=0.7.1, <0.8.0",
-    "mkdocs-awesome-pages-plugin >=2.9.2, <3.0.0",
-    "mkdocs-exclude >=1.0.2, <1.1.0",
-    "mkdocs-git-committers-plugin-2 >=2.2.3, <2.5.0",
-    "lxml >=5.1.0, <5.4.0",
-    "pymdown-extensions >=10.7, <10.13",
+  "mkdocs >=1.5.3, <1.6.0",
+  "mkdocstrings-python >=1.12.2, <1.13.0",
+  "mkdocs-material",
+  "mkdocs-section-index >=0.3.4, <0.4.0",
+  "mkdocs-git-revision-date-localized-plugin >=1.2.2, <1.4.0",
+  "mkdocs-autolinks-plugin >=0.7.1, <0.8.0",
+  "mkdocs-awesome-pages-plugin >=2.9.2, <3.0.0",
+  "mkdocs-exclude >=1.0.2, <1.1.0",
+  "mkdocs-git-committers-plugin-2 >=2.2.3, <2.5.0",
+  "lxml >=5.1.0, <5.4.0",
+  "pymdown-extensions >=10.7, <10.13",
 ]
 test = [
-    "pytest-cov >=4.1,<7.0",
-    "pytest-sugar >=0.9.5,<1.1.0",
-    "dbldatagen >=0.3.1,<0.5.0",
-    "pyparsing >=3.1.1, <3.3.0",
-    "pytest >=7.4.4,<9.0.0",
-    "pytest-xdist >=3.5.0, <3.7.0"
+  "pytest-cov >=4.1,<7.0",
+  "pytest-sugar >=0.9.5,<1.1.0",
+  "dbldatagen >=0.3.1,<0.5.0",
+  "pyparsing >=3.1.1, <3.3.0",
+  "pytest >=7.4.4,<9.0.0",
+  "pytest-xdist >=3.5.0, <3.7.0",
 ]
 
 dev = [
-    "ipython >=8.19.0, <8.31.0",
-    "ipykernel >=6.28.0, <6.30.0",
-    "pydoclint >=0.3.8,<0.6.0",
-    "prettier >=0.0.7, <0.1.0",
-    "deptry >=0.22.0, <0.23.0",
-    "yamllint >=1.33.0, <1.36.0",
-    "pre-commit >=4.0.0, <4.1.0",
-    "mypy >=1.13, <1.14",
-    "pep8-naming >=0.14.1, <0.15.0",
-    "interrogate >=1.7.0, <1.8.0",
-    "isort >=5.13.2, <5.14.0",
-    "darglint >=1.8.1, <1.9.0",
-    "ruff >=0.8.1, <0.9.0",
+  "ipython >=8.19.0, <8.31.0",
+  "ipykernel >=6.28.0, <6.30.0",
+  "pydoclint >=0.3.8,<0.6.0",
+  "prettier >=0.0.7, <0.1.0",
+  "deptry >=0.22.0, <0.23.0",
+  "yamllint >=1.33.0, <1.36.0",
+  "pre-commit >=4.0.0, <4.1.0",
+  "mypy >=1.13, <1.14",
+  "pep8-naming >=0.14.1, <0.15.0",
+  "interrogate >=1.7.0, <1.8.0",
+  "isort >=5.13.2, <5.14.0",
+  "darglint >=1.8.1, <1.9.0",
+  "ruff >=0.8.1, <0.9.0",
 ]
 [tool.semantic_release]
 logging_use_named_masks = true