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opentargets · Jul 14, 2024 · e3dd0c0 · e3dd0c0
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commit e3dd0c0
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Showing 6 changed files with 369 additions and 209 deletions.
diff --git a/objects.inv b/objects.inv
diff --git a/python_api/datasets/_datasets/index.html b/python_api/datasets/_datasets/index.html
@@ -3577,7 +3577,7 @@ <h2 id="gentropy.dataset.dataset.Dataset" class="doc doc-heading">
 <span class="sd">            ValueError: Parquet file is empty</span>
 <span class="sd">        &quot;&quot;&quot;</span>
         <span class="n">schema</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="n">get_schema</span><span class="p">()</span>
-        <span class="n">df</span> <span class="o">=</span> <span class="n">session</span><span class="o">.</span><span class="n">read_parquet</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">schema</span><span class="o">=</span><span class="n">schema</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+        <span class="n">df</span> <span class="o">=</span> <span class="n">session</span><span class="o">.</span><span class="n">load_data</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="nb">format</span><span class="o">=</span><span class="s2">&quot;parquet&quot;</span><span class="p">,</span> <span class="n">schema</span><span class="o">=</span><span class="n">schema</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
         <span class="k">if</span> <span class="n">df</span><span class="o">.</span><span class="n">isEmpty</span><span class="p">():</span>
             <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Parquet file is empty: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
         <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">_df</span><span class="o">=</span><span class="n">df</span><span class="p">,</span> <span class="n">_schema</span><span class="o">=</span><span class="n">schema</span><span class="p">)</span>
@@ -4342,7 +4342,7 @@ <h3 id="gentropy.dataset.dataset.Dataset.from_parquet" class="doc doc-heading">
 <span class="sd">        ValueError: Parquet file is empty</span>
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="n">schema</span> <span class="o">=</span> <span class="bp">cls</span><span class="o">.</span><span class="n">get_schema</span><span class="p">()</span>
-    <span class="n">df</span> <span class="o">=</span> <span class="n">session</span><span class="o">.</span><span class="n">read_parquet</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">schema</span><span class="o">=</span><span class="n">schema</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
+    <span class="n">df</span> <span class="o">=</span> <span class="n">session</span><span class="o">.</span><span class="n">load_data</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="nb">format</span><span class="o">=</span><span class="s2">&quot;parquet&quot;</span><span class="p">,</span> <span class="n">schema</span><span class="o">=</span><span class="n">schema</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span>
     <span class="k">if</span> <span class="n">df</span><span class="o">.</span><span class="n">isEmpty</span><span class="p">():</span>
         <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="sa">f</span><span class="s2">&quot;Parquet file is empty: </span><span class="si">{</span><span class="n">path</span><span class="si">}</span><span class="s2">&quot;</span><span class="p">)</span>
     <span class="k">return</span> <span class="bp">cls</span><span class="p">(</span><span class="n">_df</span><span class="o">=</span><span class="n">df</span><span class="p">,</span> <span class="n">_schema</span><span class="o">=</span><span class="n">schema</span><span class="p">)</span>