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Update with upstream repo #68

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To test out latest JPA version 6.10.0
opensrp/fhircore#2850

patrick-werner and others added 30 commits October 11, 2022 20:00
* Tracking branch for 6.1 pre-releases.

* Update to 6.1.0-PRE3-SNAPSHOT

* Adjust for hapi-fhir namespace changes and version

* Adjust version to include new hapi-fhir HSearch fast path feature

* Bump hapi PRE

* Update to PRE16

* Adjust configuration class name to HAPI-FHIR HSearch namespace consolidation.
Add commented out sample properties for lucene and elastic.
Move batch.job.enabled property under spring: prefix to have it considered.

* Adjust enumeration renaming

* Repoint FHIR 6.2.0-PRE1-SNAPSHOT

* Add missing Bean to starter configuration

* Update to hapi-fhir 6.2.0-PRE2-SNAPSHOT

* Update application-integrationtest.yaml and rename it as application.yaml to make test configuration independent of prod.

* Update to hapi-fhir 6.2.0-PRE5-SNAPSHOT

* Update dep

* Bump version fix failures

* Remove dead import

* Fix up

* remove batch refs

Co-authored-by: Michael Buckley <[email protected]>
Co-authored-by: michaelabuckley <[email protected]>
Co-authored-by: juan.marchionatto <[email protected]>
Co-authored-by: Tadgh <[email protected]>
…very

allow interceptors to be registered via properties
…release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (hapifhir#465)

* Update pom.xml to reference hapi-fhir 6.3.4-SNAPSHOT.  This also involves renaming websocket dependencies whose names have changed since 6.2.2 (ex websocket-api to websocket-jetty-api).

* Update pom to reference logback 1.2.10 explicitly to resolve the missing StaticLoggerBinder errors.

* Fix logback issue by pulling the same logback version as hapi-fhir and setting the following system property at boot: org.springframework.boot.logging.LoggingSystem=none.   Also, fix the hapi-fhir-jpaserver-base dependency error by setting this in application.yaml: allow-bean-definition-overriding: true

* Set allow-bean-definition-overriding: true on test application.yaml as well.

* Remove lines in ExampleServerR4BIT that causes an implementation guide version error.

* Upgrade to 6.3.6-SNAPSHOT and once again disable allow-bean-definition-overriding.  Also remove the Bean for IMdmLinkDoa from StartJpaConfig and the Bean for ITermCodeSystemStorageSvc in FhirServerConfigDstu2.

* Explicitly use logback 1.2.10 for both logback-classic and logback-core to resolve StaticBinderLogger not found errors.  Also, remove explici logger disabling code in Application.java.

* Restore Application.java as well as both application.yaml files to the same as master.
* Added mapping

* Added documentation
…pi-fhir release contains a fix for POSTing an XML resource with comments results in a fhir_comments error (hapifhir#465)" (hapifhir#476)

This reverts commit 9a513cd.
…ry properties that will cause problems when using hapi-fhir 6.3.6-SNAPSHOT. (hapifhir#479)
…code blocks to Application.java as well as all tests to System.setProperty("org.springframework.boot.logging.LoggingSystem", "none");
* Added default

* Refactored the default resolution
…ging, rollback slf4j-api, logback-classic, and logback-core to older versions. It's the addition of the rollback for slf4j-api that seems to restore logging.
…ven-verify

Update pipeline to run integration tests.
…ir-6-3-6-snapshot-with-logs-working-downgrade-logback-solution
…-3-6-snapshot-with-logs-working-downgrade-logback-solution

Upgrade to hapi-fhir 6.3.6-SNAPSHOT:  Alternative solution.
jamesagnew and others added 26 commits October 2, 2023 16:35
Fix hapifhir#580 Build artifact contain certain unused (but declared) dependencies
* Added IG operation providers for run time installation of IG's

* Refactored conditions for enabling the provider

* Refactoring

* Disable it by default in config as well

* document package install feature

---------

Co-authored-by: Jose Costa Teixeira <[email protected]>
* Bump setup-java and checkout versions

* Set java distribution
@rehammuzzamil
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Hi @dubdabasoduba , The build is successful on my local machine, not sure why the LocalServerPort class is not found during the dependencies being pulled in.

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