add unit tests for extract location resource via hh-registeration-loc…

…ation-questionnaire
opensrp · Feb 20, 2024 · c097b02 · c097b02
1 parent 7b04c19
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diff --git a/android/quest/src/test/java/org/smartregister/fhircore/quest/StructureMapUtilitiesTest.kt b/android/quest/src/test/java/org/smartregister/fhircore/quest/StructureMapUtilitiesTest.kt
@@ -505,4 +505,37 @@ class StructureMapUtilitiesTest : RobolectricTest() {
     Assert.assertEquals("Patient", targetResource.entry[0].resource.resourceType.toString())
     Assert.assertEquals("Condition", targetResource.entry[0].resource.resourceType.toString())
   }
+
+
+  @Test
+  fun `perform family extraction via gps location`() {
+    val registrationQuestionnaireResponseString: String =
+      "content/general/family/questionnaire-response-gps.json".readFile()
+    val registrationStructureMap = "content/general/family/family-registration-gps.map".readFile()
+    val packageCacheManager = FilesystemPackageCacheManager(true)
+    val contextR4 =
+      SimpleWorkerContext.fromPackage(packageCacheManager.loadPackage("hl7.fhir.r4.core", "4.0.1"))
+        .apply {
+          setExpansionProfile(Parameters())
+          isCanRunWithoutTerminology = true
+        }
+    val transformSupportServices = TransformSupportServices(contextR4)
+    val structureMapUtilities =
+      org.hl7.fhir.r4.utils.StructureMapUtilities(contextR4, transformSupportServices)
+    val structureMap =
+      structureMapUtilities.parse(registrationStructureMap, "eCHIS Family Registration")
+    val iParser: IParser = FhirContext.forCached(FhirVersionEnum.R4).newJsonParser()
+    val targetResource = Bundle()
+    val baseElement =
+      iParser.parseResource(
+        QuestionnaireResponse::class.java,
+        registrationQuestionnaireResponseString,
+      )
+
+    structureMapUtilities.transform(contextR4, baseElement, structureMap, targetResource)
+
+    Assert.assertEquals(2, targetResource.entry.size)
+    Assert.assertEquals("Group", targetResource.entry[0].resource.resourceType.toString())
+    Assert.assertEquals("Location", targetResource.entry[1].resource.resourceType.toString())
+  }
 }
diff --git a/android/quest/src/test/resources/content/general/family/family-registration-gps.map b/android/quest/src/test/resources/content/general/family/family-registration-gps.map
@@ -0,0 +1,95 @@
+map "https://fhir.labs.smartregister.org/fhir/StructureMap/db883d33-5dd8-4b02-9838-db980cd8e87b" = "Household Registration"
+
+uses "http://hl7.org/fhir/StructureDefinition/QuestionnaireReponse" as source
+uses "http://hl7.org/fhir/StructureDefinition/Bundle" as target
+uses "http://hl7.org/fhir/StructureDefinition/Group" as target
+
+group HouseholdRegistration(source src : QuestionnaireResponse, target bundle: Bundle) {
+    src -> bundle.id = uuid() "rule_bundle_id";
+    src -> bundle.type = 'collection' "rule_bundle_type";
+    src -> bundle.entry as entry, entry.resource = create('Group') as group then
+        ExtractGroup(src, group, bundle) "rule_bundle_entries";
+}
+
+group ExtractGroup(source src : QuestionnaireResponse, target group : Group, target bundle: Bundle) {
+       src -> group.id = uuid() "rule_group_id_generation";
+       src -> group.name = evaluate(src, $this.item.where(linkId = 'household.name').answer.value) "rule_group_name";
+
+       src -> group.identifier = create('Identifier') as groupIdentifierOpenSRPId then {
+        src -> groupIdentifierOpenSRPId.value = evaluate(src, $this.item.where(linkId = 'household.id').answer.value)
+        "rule_group_identifier_opensrp_id_value";
+        src -> groupIdentifierOpenSRPId.use = "official" "rule_group_identifier_opensrp_id_use";
+        src -> groupIdentifierOpenSRPId.period = create('Period') as period, period.start = evaluate(src, $this.authored) "rule_group_identifier_period";
+     } "rule_group_identifier_opensrp";
+
+       src -> group.identifier = create('Identifier') as groupIdentifier then {
+          src -> groupIdentifier.value = uuid() "rule_group_identifier_value";
+          src -> groupIdentifier.use = "secondary" "rule_group_identifier_use";
+       } "rule_group_identifier";
+
+       src -> group.active = true "r_grp_status_data";
+       src -> group.type = 'person' "r_grp_type_data";
+
+       src -> group.code = create('CodeableConcept') as concept then ExtractHouseholdCode(src, concept) "r_grp_code_data";
+
+       src.item as groupCharLocation where(linkId='household.location') -> group.characteristic = create ('Group_Characteristic') as groupChar then {
+        groupCharLocation -> groupChar.code = create('CodeableConcept') as villCode then{
+                src -> villCode.coding = c("http://ona.io/codes", "hh_location") as coding then {
+                src -> coding.display = 'Household Location' "r_cp_cod_disp_l";
+                } "r_grp_lcode";
+                src -> villCode.text = evaluate(src, $this.item.where(linkId = 'household.location').answer.value) "r_vcc_hh_location";
+           } "r_cp_cc_coding_l";
+           groupCharLocation -> groupChar.exclude = false "r_cp_cc_exclude_l";
+       } "r_group_char_l";
+
+        src.item as groupGpsLocation where(linkId='location-widget') then {
+            src then ExtractGpsLocation(groupGpsLocation, bundle, group) "r-gps-location";
+        } "r-gps-location-data";
+}
+
+group ExtractGpsLocation(source src: QuestionnaireResponse, target bundle: Bundle, source group : Group) {
+    src->bundle.entry as entry,
+         entry.resource = create("Location") as gpsLocation then {
+             src->gpsLocation.id = uuid(),
+             gpsLocation.status = 'active',
+             gpsLocation.mode = 'instance',
+             //gpsLocation.address = 'Regsitering Household Village', // group.characteristic.code.text //
+             //gpsLocation.name = group.name, //'Registering Household Name',
+             gpsLocation.description = 'GPS Coordinates for Household Registration' "r_gps_type_data";
+
+            src -> gpsLocation.type = create('CodeableConcept') as code then {
+                src -> code.coding = create('Coding') as coding then {
+                    src -> coding.system = 'https://fhir-ru.github.io/v3/ServiceDeliveryLocationRoleType/vs.html' "r_gps_type_coding_system";
+                    src -> coding.code = 'PTRES' "r_gps_type_c_coding_code";
+                    src -> coding.display = 'Patient\' Residence' "r_gps_type_c_coding_display";
+                } "r_gps_type_c_coding";
+                src -> code.text = 'Patient\'s Residence' "r_gps_type-text";
+            } "r_gps_location_type";
+
+            src -> gpsLocation.physicalType = create('CodeableConcept') as code then {
+                src -> code.coding = create('Coding') as coding then {
+                    src -> coding.system = 'http://terminology.hl7.org/CodeSystem/location-physical-type' "r_gps_physicalType_coding_system";
+                    src -> coding.code = 'ho' "r_gps_physicalType_c_coding_code";
+                    src -> coding.display = 'House' "r_gps_physicalType_c_coding_display";
+                } "r_gps_physicalType_c_coding";
+                src -> code.text = 'House' "r_gps_physicalType-text";
+            } "r_gps_location_physicalType";
+
+         //   src -> gpsLocation.position = create("BackboneElement") as position then {
+         //        src -> position.altitude = '0.0' "r-position-default-alt";
+         //        src.item as itemLatitude where(linkId='latitude' and answer.value.exists()) then {
+         //           src -> position.latitude = evaluate(src, $this.item.where(linkId = 'latitude').answer.value.display) "r-position-latitude";
+         //       } "r-latitude-item";
+         //       src.item as itemLongitude where(linkId='longitude' and answer.value.exists()) then {
+         //           src -> position.longitude = evaluate(src, $this.item.where(linkId = 'longitude').answer.value.display) "r-position-longitude";
+         //       } "r-longitude-item";
+         //   } "r_position_data";
+    } "r_obs_date_ws";
+
+}
+
+group ExtractHouseholdCode(source src : Group, target concept: CodeableConcept) {
+    src -> concept.coding = c("https://www.snomed.org", "35359004") as coding then {
+        src -> coding.display = 'Family' "r_cp_cod_disp";
+    } "r_cp_cc_cod";
+}
diff --git a/android/quest/src/test/resources/content/general/family/questionnaire-response-gps.json b/android/quest/src/test/resources/content/general/family/questionnaire-response-gps.json
@@ -0,0 +1,183 @@
+{
+  "resourceType": "QuestionnaireResponse",
+  "id": "47a2c01e-d968-44b8-9062-7172e77c5585",
+  "meta": {
+    "lastUpdated": "2024-02-20T10:57:25.069+05:00",
+    "tag": [
+      {
+        "system": "http://fhir.ona.io",
+        "code": "000005",
+        "display": "Clinical Focus"
+      },
+      {
+        "system": "http://fhir.ona.io",
+        "code": "000005",
+        "display": "Clinical Focus"
+      },
+      {
+        "system": "https://smartregister.org/care-team-tag-id",
+        "code": "bf369c01-0fad-4e1b-8cab-aa0fe9642cfa",
+        "display": "Practitioner CareTeam"
+      },
+      {
+        "system": "https://smartregister.org/location-tag-id",
+        "code": "0a90ea06-1026-45c1-b64b-73e13b59ad1e",
+        "display": "Practitioner Location"
+      },
+      {
+        "system": "https://smartregister.org/organisation-tag-id",
+        "code": "d1ea93d6-5b98-4fdf-b868-18b963a08307",
+        "display": "Practitioner Organization"
+      },
+      {
+        "system": "https://smartregister.org/practitioner-tag-id",
+        "code": "6edaafb0-0212-4069-a0e2-c6a90a080c83",
+        "display": "Practitioner"
+      }
+    ]
+  },
+  "contained": [
+    {
+      "resourceType": "Group",
+      "id": "31db9c93-cb3a-4854-b9ff-61040a625381",
+      "meta": {
+        "tag": [
+          {
+            "system": "https://smartregister.org/app-version",
+            "code": "1.0.3-echis",
+            "display": "Application Version"
+          },
+          {
+            "system": "https://smartregister.org/care-team-tag-id",
+            "code": "bf369c01-0fad-4e1b-8cab-aa0fe9642cfa",
+            "display": "Practitioner CareTeam"
+          },
+          {
+            "system": "https://smartregister.org/location-tag-id",
+            "code": "0a90ea06-1026-45c1-b64b-73e13b59ad1e",
+            "display": "Practitioner Location"
+          },
+          {
+            "system": "https://smartregister.org/organisation-tag-id",
+            "code": "d1ea93d6-5b98-4fdf-b868-18b963a08307",
+            "display": "Practitioner Organization"
+          },
+          {
+            "system": "https://smartregister.org/practitioner-tag-id",
+            "code": "6edaafb0-0212-4069-a0e2-c6a90a080c83",
+            "display": "Practitioner"
+          }
+        ]
+      },
+      "identifier": [
+        {
+          "use": "official",
+          "value": "162149",
+          "period": {
+            "start": "2024-02-20T10:57:24+05:00"
+          }
+        },
+        {
+          "use": "secondary",
+          "value": "52fd342e-e4fb-4768-ae3c-a7669fb449f9"
+        }
+      ],
+      "active": true,
+      "type": "person",
+      "code": {
+        "coding": [
+          {
+            "system": "https://www.snomed.org",
+            "code": "35359004",
+            "display": "Family"
+          }
+        ]
+      },
+      "name": "HhregUnitTest",
+      "managingEntity": {
+        "reference": "Organization/d1ea93d6-5b98-4fdf-b868-18b963a08307"
+      },
+      "characteristic": [
+        {
+          "code": {
+            "coding": [
+              {
+                "system": "http://ona.io/codes",
+                "code": "hh_location",
+                "display": "Household Location"
+              }
+            ],
+            "text": "HhregVilla"
+          },
+          "exclude": false
+        }
+      ]
+    }
+  ],
+  "questionnaire": "Questionnaire/447a1f25-0c44-4638-ab3d-63a97113909b",
+  "status": "completed",
+  "subject": {
+    "reference": "Group/31db9c93-cb3a-4854-b9ff-61040a625381"
+  },
+  "authored": "2024-02-20T10:57:24+05:00",
+  "author": {
+    "reference": "Practitioner/6edaafb0-0212-4069-a0e2-c6a90a080c83"
+  },
+  "item": [
+    {
+      "linkId": "7133a736-f901-4ef3-8861-2d0d00b1856e",
+      "text": "HOUSEHOLD REGISTRATION"
+    },
+    {
+      "linkId": "household.id",
+      "text": "Household OpenSRP ID",
+      "answer": [
+        {
+          "valueInteger": 162149
+        }
+      ]
+    },
+    {
+      "linkId": "household.name",
+      "text": "Household Name",
+      "answer": [
+        {
+          "valueString": "HhregUnitTest"
+        }
+      ]
+    },
+    {
+      "linkId": "household.location",
+      "text": "Household Village",
+      "answer": [
+        {
+          "valueString": "HhregVilla"
+        }
+      ]
+    },
+    {
+      "linkId": "location-widget",
+      "text": "Location Widget",
+      "item": [
+        {
+          "linkId": "latitude",
+          "text": "Latitude",
+          "answer": [
+            {
+              "valueDecimal": 24.8808488
+            }
+          ]
+        },
+        {
+          "linkId": "longitude",
+          "text": "Longitude",
+          "answer": [
+            {
+              "valueDecimal": 67.0424254
+            }
+          ]
+        }
+      ]
+    }
+  ]
+}