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Add Fortran ErrorV and associated wrapping code #191

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Add Fortran ErrorV and associated wrapping code

Add Fortran ErrorV and associated wrapping code #191

Workflow file for this run

.github/workflows/ci.yaml at 804f46d
name: CI
on:
pull_request:
push:
branches: [main]
tags: ['v*']
jobs:
mypy:
if: ${{ !github.event.pull_request.draft }}
strategy:
matrix:
os: [ "ubuntu-latest" ]
python-version: [ "3.9" ]
runs-on: "${{ matrix.os }}"
steps:
- name: Check out repository
uses: actions/checkout@v4
- uses: ./.github/actions/setup
with:
python-version: ${{ matrix.python-version }}
uv-dependency-install-flags: "--all-extras --group dev"
- name: mypy
run: |
MYPYPATH=stubs uv run --no-sync mypy src
docs:
if: ${{ !github.event.pull_request.draft }}
strategy:
matrix:
os: [ "ubuntu-latest" ]
python-version: [ "3.11" ]
runs-on: "${{ matrix.os }}"
steps:
- name: Check out repository
uses: actions/checkout@v4
- uses: ./.github/actions/setup
with:
python-version: ${{ matrix.python-version }}
uv-dependency-install-flags: "--all-extras --group docs"
- name: Install Graphviz
run: |
sudo apt-get update
sudo apt-get install -y graphviz
- name: docs
run: |
uv run --no-sync mkdocs build --strict
- uses: ./.github/actions/setup
with:
python-version: "3.11"
uv-dependency-install-flags: "--all-extras --group docs --group dev"
- name: docs-with-changelog
run: |
# Check CHANGELOG will build too
uv run --no-sync towncrier build --yes
uv run --no-sync mkdocs build --strict
# Just in case, undo the staged changes
git restore --staged . && git restore .
urls:
if: ${{ !github.event.pull_request.draft }}
runs-on: "ubuntu-latest"
steps:
- name: Check out repository
uses: actions/checkout@v4
- name: check-urls-are-valid
uses: lycheeverse/lychee-action@v2
with:
# Exclude local links
# and the template link in pyproject.toml
# Don't check for conda-forge while we haven't released there
# Don't check https://www.readthedocs.org/ as it hits rate limits
args: "--exclude 'file://' --exclude '^https://github\\.com/openscm/example-fgen-basic/pull/\\{issue\\}$' --exclude '^https://github.com/conda-forge/example-fgen-basic-feedstock$' --exclude '^https://www.readthedocs.org/$' ."
tests:
strategy:
fail-fast: false
matrix:
os: [ "ubuntu-latest" ]
# Test against all security and bugfix versions: https://devguide.python.org/versions/
python-version: [ "3.9", "3.10", "3.11", "3.12", "3.13" ]
include:
# Test other OS's for a 'very stable' Python version too
- os: "windows-latest"
python-version: "3.11"
- os: "macos-latest"
python-version: "3.11"
# Include other OS for latest Python
# because these seem to be the flakiest from experience
# so are worth the extra testing
- os: "windows-latest"
python-version: "3.13"
- os: "macos-latest"
python-version: "3.13"
runs-on: "${{ matrix.os }}"
defaults:
run:
# This might be needed for Windows
# and doesn't seem to affect unix-based systems so we include it.
# If you have better proof of whether this is needed or not,
# feel free to update.
shell: bash
steps:
- name: Check out repository
uses: actions/checkout@v4
- name: Install Fortran compiler - MacOS
# When building on Mac, we need to have a Fortran compiler
if: ${{ startsWith(matrix.os, 'macos') }}
uses: fortran-lang/setup-fortran@v1
id: setup-fortran-macos
with:
# TODO: figure out whether we need/want to use other compilers too
compiler: "gcc"
version: "13"
- uses: ./.github/actions/setup
with:
python-version: ${{ matrix.python-version }}
# When running the tests, install with all optional dependencies
# to get maximum test coverage.
# If we find that we're getting failures
# when people try to run without installing optional dependencies,
# we should add a CI step that runs the tests without optional dependencies too.
# We don't have that right now, because we're not sure this pain point exists.
uv-dependency-install-flags: "-v --reinstall-package example-fgen-basic -Ccompile-args='-v' --all-extras --group tests "
- name: Run tests
run: |
COV_DIR=`uv run --no-sync python -c 'from pathlib import Path; import example_fgen_basic; print(Path(example_fgen_basic.__file__).parent)'`
uv run --no-sync pytest -r a -v tests src --doctest-modules --doctest-report ndiff --cov=${COV_DIR} --cov-report=term-missing --cov-report=xml
uv run --no-sync coverage report
- name: Upload coverage reports to Codecov with GitHub Action
uses: codecov/[email protected]
env:
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
tests-resolution-strategies:
strategy:
fail-fast: false
matrix:
# Only test on ubuntu here for now.
# We could consider doing this on different platforms too,
# although that probably belongs better with the PyPI tests.
os: [ "ubuntu-latest" ]
# Tests with lowest direct resolution.
# We don't do lowest because that is essentially testing
# whether downstream dependencies
# have set their minimum support dependencies correctly,
# which isn't our problem to solve.
resolution-strategy: [ "lowest-direct" ]
# Only test against the oldest supported python version
# because python is itself a direct dependency
# (so we're testing against the lowest direct python too).
python-version: [ "3.9" ]
runs-on: "${{ matrix.os }}"
defaults:
run:
# This might be needed for Windows
# and doesn't seem to affect unix-based systems so we include it.
# If you have better proof of whether this is needed or not,
# feel free to update.
shell: bash
steps:
- name: Check out repository
uses: actions/checkout@v4
- name: Setup uv
id: setup-uv
uses: astral-sh/setup-uv@v4
with:
version: "0.8.8"
python-version: ${{ matrix.python-version }}
- name: Create venv
run: |
uv venv --seed
- name: Install dependencies
run: |
uv pip install --requirements requirements-only-tests-locked.txt
uv pip compile --python ${{ matrix.python-version }} --resolution ${{ matrix.resolution-strategy }} --all-extras pyproject.toml -o requirements-tmp.txt
uv pip install --requirements requirements-tmp.txt .
- name: Run tests
run: |
uv run --no-sync pytest tests -r a -v
tests-without-extras:
# Run the tests without installing extras.
# This is just a test to make sure to avoid
# breaking our test PyPI install workflow.
strategy:
fail-fast: false
matrix:
os: [ "ubuntu-latest" ]
# Just test against one Python version, this is just a helper.
# The real work happens in the test PyPI install
python-version: [ "3.11" ]
runs-on: "${{ matrix.os }}"
defaults:
run:
# This might be needed for Windows
# and doesn't seem to affect unix-based systems so we include it.
# If you have better proof of whether this is needed or not,
# feel free to update.
shell: bash
steps:
- name: Check out repository
uses: actions/checkout@v4
- name: Set up Python "${{ matrix.python-version }}"
id: setup-python
uses: actions/setup-python@v4
with:
python-version: "${{ matrix.python-version }}"
- name: Install
run: |
pip install --upgrade pip wheel
pip install --no-deps .
pip install -r requirements-locked.txt
pip install -r requirements-only-tests-min-locked.txt
- name: Run tests
run: |
pytest tests -r a -vv tests
imports-without-extras:
strategy:
fail-fast: false
matrix:
os: [ "ubuntu-latest" ]
# Test against all security and bugfix versions: https://devguide.python.org/versions/
python-version: [ "3.9", "3.10", "3.11", "3.12", "3.13" ]
runs-on: "${{ matrix.os }}"
steps:
- name: Check out repository
uses: actions/checkout@v4
- name: Set up Python "${{ matrix.python-version }}"
id: setup-python
uses: actions/setup-python@v4
with:
python-version: "${{ matrix.python-version }}"
- name: Install
run: |
pip install --upgrade pip wheel
pip install .
- name: Check importable without extras
run: python scripts/test-install.py
check-build:
strategy:
matrix:
# The tests are also effectively a test of the build (at least the Fortran compilation).
# This test is really just about checking what is packaged
# and that we have all the required pieces.
# Hence, for now, only test on ubuntu
# (little value testing on other OS's because this test is not testing compilation directly).
os: [ "ubuntu-latest" ]
python-version: [ "3.11" ]
runs-on: "${{ matrix.os }}"
steps:
- name: Check out repository
uses: actions/checkout@v4
- uses: ./.github/actions/setup
with:
python-version: ${{ matrix.python-version }}
uv-dependency-install-flags: "--group dev"
- name: Build package
run: |
uv run --no-sync python scripts/add-locked-targets-to-pyproject-toml.py
cat pyproject.toml
uv build --sdist
# Just in case, undo the changes to `pyproject.toml`
git restore --staged . && git restore .
- name: Check included files in source distribution
run: |
tar -tvf dist/example_fgen_basic-*.tar.gz --wildcards '*example_fgen_basic/py.typed'
tar -tvf dist/example_fgen_basic-*.tar.gz --wildcards 'example_fgen_basic-*/LICENCE'
- name: Check source distribution can be used for installation
run: |
cd dist
ls
python3 -m venv venv
source venv/bin/activate
pip install example_fgen_basic*
python -c 'from example_fgen_basic.get_wavelength import get_wavelength_plain; print(get_wavelength_plain(23.4))'
# check-build-wheel
# For now, decide not to do this as odds of breaking the build are low
# (and we already implicitly test this when running the tests).
# If we find we are breaking the wheel build inadvertently often,
# we can always add this step in.
check-dependency-licences:
strategy:
matrix:
os: [ "ubuntu-latest" ]
python-version: [ "3.11" ]
runs-on: "${{ matrix.os }}"
steps:
- name: Check out repository
uses: actions/checkout@v4
- uses: ./.github/actions/setup
with:
python-version: ${{ matrix.python-version }}
uv-dependency-install-flags: "--group dev"
- name: Check licences of dependencies
shell: bash
run: |
TEMP_FILE=$(mktemp)
uv export --no-dev > $TEMP_FILE
uv run --no-sync liccheck -r $TEMP_FILE -R licence-check.txt
cat licence-check.txt