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@openproblems-bio

Open Problems in Single-Cell Analysis

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  1. openproblems openproblems Public

    Formalizing and benchmarking open problems in single-cell genomics

    Python 312 77

  2. website website Public

    Website hosted at https://openproblems.bio

    TeX 3 7

Repositories

Showing 10 of 31 repositories
  • task_dimensionality_reduction Public
    openproblems-bio/task_dimensionality_reduction’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 18, 2024
  • task_grn_inference Public
    openproblems-bio/task_grn_inference’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Sep 18, 2024
  • task_denoising Public

    Removing noise in sparse single-cell RNA-sequencing count data

    openproblems-bio/task_denoising’s past year of commit activity
    Nextflow 0 MIT 0 2 2 Updated Sep 18, 2024
  • common_resources Public

    This repo contains common resources that can be used for OpenProblems v2 tasks.

    openproblems-bio/common_resources’s past year of commit activity
    TeX 0 MIT 1 1 0 Updated Sep 18, 2024
  • core Public
    openproblems-bio/core’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 18, 2024
  • task_template Public template

    This repo is a template to create a new task that has the correct files and structure needed to start a new task.

    openproblems-bio/task_template’s past year of commit activity
    Shell 0 MIT 1 0 0 Updated Sep 18, 2024
  • task_batch_integration Public
    openproblems-bio/task_batch_integration’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Sep 17, 2024
  • task_predict_modality Public

    Predicting the profiles of one modality (e.g. protein abundance) from another (e.g. mRNA expression).

    openproblems-bio/task_predict_modality’s past year of commit activity
    R 0 MIT 0 0 3 Updated Sep 17, 2024
  • nbt2023-manuscript Public
    openproblems-bio/nbt2023-manuscript’s past year of commit activity
    R 1 0 0 0 Updated Sep 16, 2024
  • website Public

    Website hosted at https://openproblems.bio

    openproblems-bio/website’s past year of commit activity
    TeX 3 CC-BY-4.0 7 32 (1 issue needs help) 13 Updated Sep 11, 2024
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