refactor: update depinfo to version >2

Author: Midnighter

setup.cfg

@@ -6,7 +6,7 @@ parse = (?P<major>\d+)
 	\.(?P<minor>\d+)
 	\.(?P<patch>\d+)
 	(?P<release>[a]*)(?P<num>\d*)
-serialize = 
+serialize =
 	{major}.{minor}.{patch}{release}{num}
 	{major}.{minor}.{patch}
 tag_name = {new_version}
@@ -15,15 +15,15 @@ tag_name = {new_version}
 name = cobra
 url = https://opencobra.github.io/cobrapy
 download_url = https://pypi.org/project/cobra
-project_urls = 
+project_urls =
 	Source Code = https://github.com/opencobra/cobrapy
 	Documentation = https://cobrapy.readthedocs.io
 	Bug Tracker = https://github.com/opencobra/cobrapy/issues
 author = The cobrapy core development team.
 author_email = [email protected]
 maintainer = Moritz E. Beber
 maintainer_email = [email protected]
-classifiers = 
+classifiers =
 	Development Status :: 5 - Production/Stable
 	Intended Audience :: Science/Research
 	License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
@@ -40,7 +40,7 @@ license = LGPL-2.0-or-later OR GPL-2.0-or-later
 description = COBRApy is a package for constraint-based modeling of metabolic networks.
 long_description = file: README.rst, INSTALL.rst
 long_description_content_type = text/x-rst
-keywords = 
+keywords =
 	metabolism
 	biology
 	constraint-based
@@ -52,9 +52,9 @@ keywords =
 
 [options]
 zip_safe = True
-install_requires = 
+install_requires =
 	appdirs ~=1.4
-	depinfo ~=1.7
+	depinfo ~=2.2
 	diskcache ~=5.0
 	future
 	httpx ~=0.24
@@ -67,24 +67,24 @@ install_requires =
 	rich >=8.0
 	ruamel.yaml ~=0.16
 	swiglpk
-tests_require = 
+tests_require =
 	tox
 packages = find:
-package_dir = 
+package_dir =
 	= src
 
 [options.packages.find]
 where = src
 
 [options.package_data]
-cobra = 
+cobra =
 	data/*
 	io/*.json
 
 [options.extras_require]
-array = 
+array =
 	scipy
-development = 
+development =
 	black
 	bumpversion
 	isort
@@ -96,7 +96,7 @@ universal = 1
 [bumpversion:part:release]
 optional_value = placeholder
 first_value = placeholder
-values = 
+values =
 	placeholder
 	a
 

src/cobra/util/util.py

@@ -3,7 +3,7 @@
 import textwrap
 from typing import Any
 
-from depinfo import print_dependencies
+from depinfo.application import DisplayApplication
 
 
 def format_long_string(string: str, max_length: int = 50) -> str:
@@ -59,4 +59,4 @@ def __getitem__(self, item: Any) -> Any:
 
 def show_versions() -> None:
     """Print dependency information."""
-    print_dependencies("cobra")
+    DisplayApplication.run("cobra")

tests/test_util/test_util.py

@@ -39,11 +39,9 @@ def test_show_versions(capsys) -> None:
     show_versions()
     captured = capsys.readouterr()
     lines = captured.out.split("\n")
-    assert lines[1].startswith("System Information")
-    assert lines[2].startswith("==================")
-    assert lines[3].startswith("OS")
-    assert lines[4].startswith("OS-release")
-    assert lines[5].startswith("Python")
-
-    assert lines[7].startswith("Package Versions")
-    assert lines[8].startswith("================")
+    assert lines[1].startswith("Package Information")
+    assert lines[2].startswith("------------------")
+    assert lines[3].startswith("cobra")
+
+    assert lines[5].startswith("Dependency Information")
+    assert lines[6].startswith("------------------")