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@opencobra @AGHerwig @metacollect-org @UnseenBio @PrinciplesInCellPhysiologyScholars @opentecr

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Midnighter/README.md

About Me

As a bioinformatician, one of my guiding questions is, "How can I use my knowledge of biological research and software development for the good of humanity?"

This question leads me to the following topics that I am very passionate about:

  • Thinking in systems, both biological networks and software architecture.
  • Designing automated solutions for and with human beings.
  • Access to and transparency of knowledge as embodied by, for example, the open science movement or the Open Knowledge Foundation and Wikipedia to name but a few.

Contact

You can also find me on the following platforms:

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  1. dependency-info dependency-info Public

    Retrieve and print Python package dependencies.

    Python 4 3

  2. metanetx-sdk metanetx-sdk Public

    Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org registries.

    Python 5

  3. structurizr-python structurizr-python Public archive

    A Python 3 port of Simon Brown's Structurizr diagrams-as-code architecture description tool.

    Python 66 16

  4. fastapi-base fastapi-base Public

    A base Docker image for microservices using FastAPI. The Docker image environment is based on Alpine Linux or Debian.

    Shell 9 2

  5. opencobra/cobrapy opencobra/cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 465 218

  6. opencobra/memote opencobra/memote Public

    memote – the genome-scale metabolic model test suite

    HTML 127 27