Fix bug with reverse complement not being normalized. #65
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…ng identification of canonical kmers.
Keats
reviewed
Jan 30, 2023
| let rc = seq.reverse_complement(); | ||
| for (_, kmer, is_rev_complement) in | ||
| seq.normalize(false).canonical_kmers(self.kmer_length, &rc) | ||
| let norm_seq = seq.normalize(false); |
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I think in practice this trait is not well thought. The process function should take a &Sequence since we do not need anything from the &SequenceRecord and normalizing it here implicitly would allocate twice for normalized sequence if you need that elsewhere. In that case you would still need to call normalize before calling process though.
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Fixes bug with reverse complement of sequence not being normalized during identification of canonical kmers. This impacts both fixed and scaled sketches, and results in incorrect containment and Jaccard values.