We distribute Clustering.yml runs with different backends.

• Clustering_conda.yml. Conda semi-reproducible (no pinning, pip)
• Clustering_singularity.yml. Singularity semi-reproducible, local SIF files.
• Clustering_oras.yml. Singularity semi-reproducible, prebuilt remote images.
• Clustering_envmodules.yml. Easybuilt with default optimization.

Conda

Files

• clustbench.yml
• fcps.yml
• r.yml
• sklearn.yml

How to build

No need to ob software conda pin / prepare; let ob run benchmark -b Clustering_conda.yml --local do it.

Apptainer semi-reproducible and local

Files

• clustbench_singularity.def
• fcps_singularity.def
• r_singularity.def
• sklearn_singularity.def

How to build

• build_singularity.sh

Aptainer semi-reproducible and remote

No need to prepare/build anything; let ob run benchmark -b Clustering_oras.yml --local do it using pre-built images from https://gitlab.renkulab.io/izaskun.mallona/clustering_example/container_registry.

Apptainer (reproducible) with easybuild

Doing...

Lorem ipsum.

envmodules - reproducible builds with easybuild

Files

• clustbench.eb
• fcps.eb

How to build

1. Mind https://github.com/easybuilders/easybuild-easyconfigs/commit/e29210626f076e3a207f1abf3759ea124e28f8b2
2. Mind clustbench is only installable from https://github.com/gagolews/genieclust/archive/refs/tags/v1.1.6.tar.gz and not from pypi's tgz (!), download it locally and ideally update the easyconfig to automate this
3. python3-wget from pypi doesn't look very well maintaned
4. eb fcps.eb --robot
5. eb clustbench.eb --robot