docs: improve docs #18
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btraven00
commented
May 5, 2025
btraven00
commented
- documentation fixes
- add makefile
- use cores and task-timeout
- make script executable - use /bin/sh instead of /bin/bash - add top-level Makefile to prepare env
imallona
reviewed
May 5, 2025
| @@ -0,0 +1,11 @@ | |||
| MAX_CORES ?= 10 | |||
| # by default, we want to run all snakemake rules even if there are failures | |||
| OB_CMD=ob run benchmark -k --local --task-timeout "4h" | |||
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@markrobinsonuzh the 4h would be per (isolated) task (rule), we could well reduce it to 10 min or whatever fitting
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