integrate dev branch and update software environments #61
Workflow file for this run
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| name: Run Benchmark | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| workflow_dispatch: | |
| permissions: | |
| id-token: write | |
| pages: write | |
| jobs: | |
| run-benchmark: | |
| name: Run Benchmark | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Install Mambaforge | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-variant: Miniforge3 | |
| use-mamba: true | |
| activate-environment: omnibenchmark-env | |
| python-version: "3.12" | |
| auto-update-conda: true | |
| channels: conda-forge | |
| - name: Cache environment | |
| id: cache-env | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| ~/.conda/pkgs | |
| ~/.conda/envs/omnibenchmark-env | |
| ~/.cache/pip | |
| key: ${{ runner.os }}-conda-pip-${{ hashFiles('requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-conda-pip- | |
| - name: Install omnibenchmark CLI | |
| shell: bash -l {0} | |
| run: | | |
| mamba install -y pip | |
| pip install git+https://github.com/omnibenchmark/omnibenchmark.git@dev | |
| - name: Load benchmark cache | |
| id: cache-benchmark | |
| uses: actions/cache@v3 | |
| with: | |
| path: out/ | |
| key: benchmark-${{ runner.os }}-${{ hashFiles('Clustering.yaml') }} | |
| - name: Run benchmark | |
| shell: bash -l {0} | |
| continue-on-error: false | |
| run: | | |
| echo "y" | ob run benchmark -b Clustering_conda_smoketest.yml --local --cores 3 --continue-on-error | |
| upload-artifact: | |
| name: Benchmark Artifact | |
| runs-on: ubuntu-latest | |
| needs: run-benchmark | |
| if: github.ref == 'refs/heads/main' && github.repository_owner == 'omnibenchmark' | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Load cached output | |
| uses: actions/cache@v3 | |
| with: | |
| path: out/ | |
| key: benchmark-${{ runner.os }}-${{ hashFiles('Clustering.yaml') }} | |
| - name: Prepare output | |
| run: | | |
| zip -r benchmark_output.zip out/ | |
| mkdir -p gh-pages | |
| cp out/plotting/plotting_report.html gh-pages/index.html | |
| - name: Upload zipped output | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: benchmark-output | |
| path: benchmark_output.zip | |
| retention-days: 7 | |
| - name: Upload Pages Artifact | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| path: gh-pages | |
| - name: Deploy to GitHub Pages | |
| uses: actions/deploy-pages@v4 | |
| - name: Create Job Summary | |
| if: always() | |
| run: | | |
| echo "### Reports" >> $GITHUB_STEP_SUMMARY | |
| echo "- [Plotting Report](https://${{ github.repository_owner }}.github.io/${{ github.event.repository.name }})" >> $GITHUB_STEP_SUMMARY | |
| echo "### All Outputs" >> $GITHUB_STEP_SUMMARY | |
| echo "- [Complete Benchmark Output](https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}#artifacts)" >> $GITHUB_STEP_SUMMARY |