micromamba #25
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| name: micromamba | |
| # concurrency: | |
| # group: ${{ github.head_ref || github.run_id }} | |
| # cancel-in-progress: true | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| schedule: | |
| # - cron: "*/30 * * * *" # Runs every 30 minutes for testing | |
| - cron: "30 1 * * *" # at 1.30am | |
| ## these permissions are only for deployment to gh pages | |
| # permissions: | |
| # id-token: write | |
| # pages: write | |
| jobs: | |
| run-benchmark-micromamba: | |
| name: run_clustbench_micromamba | |
| ## runs-on: ubuntu-latest | |
| runs-on: self-hosted | |
| strategy: | |
| matrix: | |
| ob_branch: [dev, reduce_install_scope, main] | |
| micromamba-version: ['2.1.1-0', '2.0.5-0', '1.5.12-0', '1.5.8-0'] | |
| fail-fast: false | |
| concurrency: | |
| group: micromamba-${{ matrix.micromamba-version }}-${{ matrix.ob_branch }} | |
| cancel-in-progress: false # true | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Install (with) micromamba | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| cache-environment: false # true | |
| micromamba-version: ${{ matrix.micromamba-version }} | |
| download-micromamba: true | |
| micromamba-binary-path: ${{ runner.temp }}/bin/micromamba-${{ matrix.micromamba-version }}/micromamba | |
| environment-name: test-env-${{matrix.ob_branch }}-${{ matrix.micromamba-version }} | |
| create-args: >- | |
| python=3.12 | |
| pip | |
| conda | |
| post-cleanup: environment # all | |
| - name: Overwrite omnibenchmark CLI to branch | |
| shell: bash -l {0} | |
| run: | | |
| micromamba --version | |
| pip install git+https://github.com/omnibenchmark/omnibenchmark.git@${{ matrix.ob_branch }} | |
| # - name: Enable a benchmarking `out` cache | |
| # id: cache-benchmark | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: out/ | |
| # key: benchmark-${{ runner.os }}-${{ hashFiles('Clustering.yaml') }} | |
| - name: Run benchmark | |
| shell: bash -l {0} | |
| run: | | |
| env | |
| output=$( echo "y" | ob run benchmark -b Clustering.yaml --local --cores 10 2>&1 ) | |
| status=$? | |
| if echo "$output" | grep -i 'Benchmark run has finished successfully'; then | |
| status=0 | |
| fi | |
| echo -e $output | |
| sh -c "exit $status" | |
| if: matrix.ob_branch == 'dev' || matrix.ob_branch == 'reduce_install_scope' | |
| - name: Run benchmark | |
| shell: bash -l {0} | |
| run: | | |
| env | |
| output=$( ob run benchmark -b Clustering.yaml --local --threads 10 2>&1 ) | |
| status=$? | |
| if echo "$output" | grep -i 'Benchmark run has finished successfully'; then | |
| status=0 | |
| fi | |
| echo -e $output | |
| sh -c "exit $status" | |
| if: matrix.ob_branch == 'main' | |
| # upload-artifact: | |
| # name: Benchmark Artifact | |
| # runs-on: ubuntu-latest | |
| # ## runs-on: self-hosted | |
| # needs: run-benchmark | |
| # if: always() | |
| # steps: | |
| # - name: Check out repository | |
| # uses: actions/checkout@v4 | |
| # - name: Load cached output | |
| # uses: actions/cache@v3 | |
| # with: | |
| # path: out/ | |
| # key: benchmark-${{ runner.os }}-${{ hashFiles('Clustering.yaml') }} | |
| # - name: Prepare output | |
| # run: | | |
| # zip -r benchmark_output.zip out/ | |
| # mkdir -p gh-pages | |
| # cp out/plotting/plotting_report.html gh-pages/index.html | |
| # - name: Upload zipped output | |
| # uses: actions/upload-artifact@v4 | |
| # with: | |
| # name: benchmark-output | |
| # path: benchmark_output.zip | |
| # retention-days: 7 | |
| # - name: Upload Pages Artifact | |
| # uses: actions/upload-pages-artifact@v3 | |
| # with: | |
| # path: gh-pages | |
| # - name: Deploy to GitHub Pages | |
| # uses: actions/deploy-pages@v4 | |
| # - name: Create Job Summary | |
| # if: always() | |
| # run: | | |
| # echo "### Reports" >> $GITHUB_STEP_SUMMARY | |
| # echo "- [Plotting Report](https://${{ github.repository_owner }}.github.io/${{ github.event.repository.name }})" >> $GITHUB_STEP_SUMMARY | |
| # echo "### All Outputs" >> $GITHUB_STEP_SUMMARY | |
| # echo "- [Complete Benchmark Output](https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}#artifacts)" >> $GITHUB_STEP_SUMMARY | |