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Ome zarr v0.5 writing#413

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will-moore wants to merge 36 commits intoome:masterome/ome-zarr-py:masterfrom will-moore:ome-zarr-v0.5_writingwill-moore/ome-zarr-py:ome-zarr-v0.5_writingCopy head branch name to clipboard

+244-122

Commits

Commits on Oct 26, 2024

• Basic read example working (no labels)

  will-moore

  committed
  b0d6b3d

Commits on Oct 30, 2024

• cli_tests passing

  will-moore

  committed
  da8c32f

Commits on Oct 31, 2024

• Passing all 6 test_io.py

  will-moore

  committed
  19b89a8

Commits on Nov 4, 2024

• Passing tests/test_io.py and test_node.py

  will-moore

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  a954161

• Include dtype in group.create_array()

  will-moore

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  80f6e01

• Uncomment labels spec. Fixes test_ome_zarr.py download

  will-moore

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  e568911

• Fix test_scaler

  Show description for b49ecc8
  will-moore

  committed
  b49ecc8

• Add dimension_separator to existing v2 data .zarray to fix test_upgrade.py v2

  will-moore

  committed
  18abe02

• Fixed test_write_image_dask

  will-moore

  committed
  86142c3

Commits on Nov 7, 2024

• Pin zarr==v3.0.0-beta.1

  will-moore

  committed
  31584bf

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  Show description for daa3546
  pre-commit-ci[bot]

  committed
  daa3546

• Remove python 3.9 and 3.10 from build.yml

  will-moore

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  fa29ccc

• Remove unused imports

  will-moore

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  8fc02b4

• remove fsspec from .isort.cfg

  will-moore

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  29890b8

• mypy fix

  will-moore

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  35bc979

Commits on Nov 11, 2024

• Use Blosc compression by default

  will-moore

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  75ba690

• Black formatting fixes

  will-moore

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  52aceb0

• Use group.array_values() for iterating arrays

  will-moore

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  55d4ba9

• Use zarr_format=2 for zarr.open() in test_writer.py

  will-moore

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  0ea21bc

Commits on Nov 12, 2024

• Fix return type RemoteStore | LocalStore

  will-moore

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  7fc113b

• Support reading of Zarr v3 data

  will-moore

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  94f7ace

• Hard-code zarr_version=2 in parse_url()

  will-moore

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  d140c6d

Commits on Nov 13, 2024

• Use read_only instead of mode when creating Stores

  will-moore

  committed
  f7b5f98

• Pin zarr-python to specific commit on main branch

  will-moore

  committed
  c527c77

• Fix test_write_image_compressed

  will-moore

  committed
  d8d5378

Commits on Dec 9, 2024

• Support READING of zarr v3 data

  will-moore

  committed
  2138160

• Merge remote-tracking branch 'origin/master' into zarr_v3. Use zarr v3.0.0-beta.3

  will-moore

  committed
  af2648d

• Check that PR is green IF we skip test_writer with 3D-scale-True-from_array

  will-moore

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  1ea9e1a

• Bump dependencies including zarr==v3.0.0-beta.3 in docs/requirements.txt

  will-moore

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  7754774

• Specify python 3.12 in .readthedocs.yml

  will-moore

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  499531f

Commits on Dec 17, 2024

• Merge remote-tracking branch 'origin/master' into zarr_v3

  will-moore

  committed
  c0fe50d

• Add CurrentFormat = FormatV05 and tweak writing to give valid v0.5 image

  will-moore

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  b717a15

• Fix test_cli.py test_io.py and test_node.py

  will-moore

  committed
  7046182

• Fix test_ome_zarr.py using FormatV04

  will-moore

  committed
  bb9521c

• Fix test_reader.py

  will-moore

  committed
  40f9cd8

• Fix test_write_image_current()

  will-moore

  committed
  49035b7