Add sample volumeEM datasets from the BIA #14
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see: https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/pages/vem.html Generated with the script: ``` echo "URL,Study" for x in 10094 10310 10392 10442 10479 10553 10819 10967 10903 10311 11380; do for k in $(mc ls uk1/bia-integrator-data/EMPIAR-${x}/ --json | jq -r '.url + .key'); do echo ${k},EMPIAR-${x} done done ```
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updated script:
```
echo "URL,Study"
for x in 10094 10310 10392 10442 10479 10553 10819 10967 10903 10311 11380;
do
for k in $(mc ls uk1/bia-integrator-data/EMPIAR-${x}/ --json | jq -r '.url + .key + (.key | gsub("/";"")) + ".zarr"');
do
echo ${k},EMPIAR-${x}
done
done
```
|
Is there a flag to have size, etc. populated, @will-moore ? |
|
The error at https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/EMPIAR-10903/IM2/IM2.zarr/0/ is a little cryptic, but I think it's failing because each |
|
@joshmoore See README at https://github.com/ome/ome-zarr-catalog for how to add extra columns, reading from "We can specify which columns from the following list to add"... |
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see: https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/pages/vem.html
Generated with the script:
cc: @will-moore @mrmh2