Skip to content

Commit

Permalink
Merge pull request #261 from joshmoore/rfc-2-updates
Browse files Browse the repository at this point in the history 
RFC-2 Updates
  • Loading branch information
@joshmoore
joshmoore authored Sep 13, 2024
2 parents f2d70dc + fbeba6a commit 10b4fb0
Show file tree
Hide file tree
Showing 14 changed files with 260 additions and 69 deletions.
2 changes: 1 addition & 1 deletion conf.py
View file
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@

extensions = ["myst_parser"]
source_suffix = [".rst", ".md"]
myst_heading_anchors = 4
myst_heading_anchors = 5

templates_path = ['_templates']
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store', '.git', '.pytest_cache', '**/.pytest_cache', '**/.tox', 'README.md', 'LICENSE.md', 'CONTRIBUTING.md']
Expand Down
44 changes: 29 additions & 15 deletions rfc/1/index.md
View file
Original file line number Diff line number Diff line change
Expand Up @@ -18,76 +18,90 @@ versions/index
This RFC is currently being responded to (R4).

```{list-table} Record
:widths: 20, 20, 20, 15, 10
:widths: 8, 20, 20, 20, 15, 10
:header-rows: 1
:stub-columns: 1
* - Name
* - Role
- Name
- GitHub Handle
- Institution
- Date
- Status
* - Josh Moore
* - Author
- Josh Moore
- [joshmoore](https://github.com/joshmoore)
- [German BioImaging, e.V.](https://ror.org/05tpnw772)
- 2023-12-23
- Author ([PR](https://github.com/ome/ngff/pull/222))
* - Davis Bennett, John Bogovic, Michael Innerberger, Mark Kittisopikul, Virginia Scarlett, Yurii Zubov
* - Reviewer
- Davis Bennett, John Bogovic, Michael Innerberger, Mark Kittisopikul, Virginia Scarlett, Yurii Zubov
- d-v-b, bogovicj, minnerbe, mkitti, virginiascarlett, yuriyzubov
- Janelia
- 2024-02-26
- [Review](./reviews/2/index)
* - Kevin Yamauchi, Virginie Uhlmann
* - Reviewer
- Kevin Yamauchi, Virginie Uhlmann
- kevinyamauchi, vuhlmann
- ETH, BiovisionCenter
- 2024-03-05
- [Review](./reviews/1/index)
* - Matthew Hartley
* - Reviewer
- Matthew Hartley
- mrmh2
- EMBL-EBI
- 2024-03-05
- [Review](./reviews/3/index)
* - Wouter-Michiel Vierdag, Luca Marconato
* - Commenter
- Wouter-Michiel Vierdag, Luca Marconato
- melonora, LucaMarconato
- EMBL
- 2024-01-13
- [Comment](./comments/1/index)
* - Matt McCormick
* - Commenter
- Matt McCormick
- thewtex
- ITK
- 2024-01-09
- [Comment](./comments/2/index)
* - Josh Moore
* - Author
- Josh Moore
- joshmoore
- German BioImaging
- 2024-08-29
- [Response](./responses/1/index)
* - Jean-Marie Burel
* - Endorser
- Jean-Marie Burel
- jburel
- University of Dundee
- 2024-09-09
- [Endorse](https://github.com/ome/ngff/pull/258)
* - Will Moore
* - Endorser
- Will Moore
- will-moore
- University of Dundee
- 2024-09-09
- [Endorse](https://github.com/ome/ngff/pull/258)
* - Juan-Nuñez Iglesias
* - Endorser
- Juan-Nuñez Iglesias
- jni
- Monash University
- 2024-09-09
- [Endorse](https://github.com/ome/ngff/pull/258)
* - Norman Rzepka
* - Endorser
- Norman Rzepka
- normanrz
- scalable minds GmbH
- 2024-09-09
- [Endorse](https://github.com/ome/ngff/pull/258)
* - Jan Eglinger
* - Endorser
- Jan Eglinger
- imagejan
- FMI Basel
- 2024-09-09
- [Endorse](https://github.com/ome/ngff/pull/258)
* - Joel Lüthi
* - Endorser
- Joel Lüthi
- jluethi
- BioVisionCenter, University of Zurich
- 2024-09-10
Expand Down
9 changes: 9 additions & 0 deletions rfc/2/comments/index.md
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
# Comments

Additional comments of RFC-2:

```{toctree}
:maxdepth: 1
:glob:
*/index
```
159 changes: 133 additions & 26 deletions rfc/2/index.md
View file
Original file line number Diff line number Diff line change
@@ -1,39 +1,146 @@
# RFC-2: Zarr v3

```{toctree}
:maxdepth: 1
:hidden:
review_1
review_1b
review_2
review_3
:maxdepth: 1
reviews/index
comments/index
responses/index
versions/index
```

Adopt the version 3 of Zarr for OME-Zarr.

## Status

This RFC is currently in RFC state (R6).

| Role | Name | GitHub Handle | Institution | Date | Status |
| -------- | ------------------- | --------------------------------------------------- | -------------------------------------------------- | ---------- | ----------------------------------------------------------------------- |
| Author | Norman Rzepka | [normanrz](https://github.com/normanrz) | [scalable minds](https://scalableminds.com) | 2024-02-14 | |
| Endorser | Davis Bennett | [d-v-b](https://github.com/d-v-b) | | 2024-02-14 | Endorse |
| Endorser | Kevin Yamauchi | [kevinyamauchi](https://github.com/kevinyamauchi) | ETH Zürich | 2024-02-16 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1947942934) |
| Endorser | John Bogivic | [bogovicj](https://github.com/bogovicj) | HHMI Janelia Research Campus | 2024-02-16 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1948547356) |
| Endorser | Matthew Hartley | [matthewh-ebi](https://github.com/matthewh-ebi) | EMBL-EBI | 2024-02-16 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1948912814) |
| Endorser | Christian Tischer | [tischi](https://github.com/tischi) | EMBL | 2024-02-16 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1949058616) |
| Endorser | Joel Lüthi | [jluethi](https://github.com/jluethi) | BioVisionCenter, University of Zurich | 2024-02-16 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1949333769) |
| Endorser | Constantin Pape | [constantinpape](https://github.com/constantinpape) | University Göttingen | 2024-02-18 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1951318754) |
| Endorser | Will Moore | [will-moore](https://github.com/will-moore) | OME, University of Dundee | 2024-02-19 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1952057704) |
| Endorser | Juan Nunez-Iglesias | [jni](https://github.com/jni) | Biomedicine Discovery Institute, Monash University | 2024-02-20 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1953922897) |
| Endorser | Eric Perlman | [perlman](https://github.com/perlman) | | 2024-02-22 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1960272942) |
| Endorser | Ziwen Liu | [ziw-liu](https://github.com/ziw-liu) | Chan Zuckerberg Biohub | 2024-03-12 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1992588774) |
| Endorser | Lachlan Deakin | [LDeakin](https://github.com/LDeakin) | Australian National University | 2024-03-14 | [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1998594492) |
| Reviewer | Melissa Linkert, Sebastién Besson, Chris Allan, Jason Swedlow | glencoesoftware | Glencoe Software | 2024-05-23 | [Review](./review_1.md) |
| Reviewer | Yaroslav O. Halchenko | yarikoptic | Dartmouth College, DANDI Project | 2024-06-10 | [Review](./review_2.md) |
| Reviewer | Jeremy Maitin-Shepard | jbms | Google | 2024-04-30 | [Review](./review_3.md) |
| Reviewer | Melissa Linkert, Sebastién Besson, Chris Allan, Jason Swedlow | glencoesoftware | Glencoe Software | 2024-08-05 | [Accept](./review_1b.md) |
This RFC is currently in RFC state (R2).

```{list-table} Record
:widths: 8, 20, 20, 20, 15, 10
:header-rows: 1
:stub-columns: 1
* - Role
- Name
- GitHub Handle
- Institution
- Date
- Status
* - Author
- Norman Rzepka
- [normanrz](https://github.com/normanrz)
- [scalable minds](https://scalableminds.com)
- 2024-02-14
-
* - Endorser
- Davis Bennett
- [d-v-b](https://github.com/d-v-b)
-
- 2024-02-14
- Endorse
* - Endorser
- Kevin Yamauchi
- [kevinyamauchi](https://github.com/kevinyamauchi)
- ETH Zürich
- 2024-02-16
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1947942934)
* - Endorser
- John Bogivic
- [bogovicj](https://github.com/bogovicj)
- HHMI Janelia Research Campus
- 2024-02-16
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1948547356)
* - Endorser
- Matthew Hartley
- [matthewh-ebi](https://github.com/matthewh-ebi)
- EMBL-EBI
- 2024-02-16
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1948912814)
* - Endorser
- Christian Tischer
- [tischi](https://github.com/tischi)
- EMBL
- 2024-02-16
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1949058616)
* - Endorser
- Joel Lüthi
- [jluethi](https://github.com/jluethi)
- BioVisionCenter, University of Zurich
- 2024-02-16
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1949333769)
* - Endorser
- Constantin Pape
- [constantinpape](https://github.com/constantinpape)
- University Göttingen
- 2024-02-18
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1951318754)
* - Endorser
- Will Moore
- [will-moore](https://github.com/will-moore)
- OME, University of Dundee
- 2024-02-19
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1952057704)
* - Endorser
- Juan Nunez-Iglesias
- [jni](https://github.com/jni)
- Biomedicine Discovery Institute, Monash University
- 2024-02-20
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1953922897)
* - Endorser
- Eric Perlman
- [perlman](https://github.com/perlman)
-
- 2024-02-22
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1960272942)
* - Endorser
- Ziwen Liu
- [ziw-liu](https://github.com/ziw-liu)
- Chan Zuckerberg Biohub
- 2024-03-12
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1992588774)
* - Endorser
- Lachlan Deakin
- [LDeakin](https://github.com/LDeakin)
- Australian National University
- 2024-03-14
- [Endorse](https://github.com/ome/ngff/pull/227#issuecomment-1998594492)
* - Reviewer
- Melissa Linkert, Sébastien Besson, Chris Allan, Jason Swedlow
- glencoesoftware
- Glencoe Software
- 2024-05-23
- [Review](./reviews/1/index)
* - Reviewer
- Yaroslav O. Halchenko
- yarikoptic
- Dartmouth College, DANDI Project
- 2024-06-10
- [Review](./reviews/2/index)
* - Reviewer
- Jeremy Maitin-Shepard
- jbms
- Google
- 2024-04-30
- [Review](./reviews/3/index)
* - Reviewer
- Melissa Linkert, Sébastien Besson, Chris Allan, Jason Swedlow
- glencoesoftware
- Glencoe Software
- 2024-08-05
- [Accept](./reviews/1b/index)
* - Reviewer
- Jeremy Maitin-Shepard
- jbms
- Google
- 2024-09-11
- [Accept](./reviews/3b/index)
* - Reviewer
- Yaroslav O. Halchenko
- yarikoptic
- Dartmouth College, DANDI Project
- 2024-09-11
- [Accept](./reviews/2b/index)
```

## Overview

Expand Down
9 changes: 9 additions & 0 deletions rfc/2/responses/index.md
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
# Responses

Responses from the authors of RFC-2:

```{toctree}
:maxdepth: 1
:glob:
*/index
```
17 changes: 0 additions & 17 deletions rfc/2/review_1b.md
View file

This file was deleted.

Loading

0 comments on commit 10b4fb0

Please sign in to comment.