job-arrays

example job arrays to process sequence data in an HPC SLURM env

Name		Name	Last commit message	Last commit date
Latest commit History 52 Commits
BLEACH-blastp.sbatch		BLEACH-blastp.sbatch
BLEACH_4Long.sbatch		BLEACH_4Long.sbatch
CC-bestPract-HPC-ML.md		CC-bestPract-HPC-ML.md
Cry2H_BowtieMapping.sbatch		Cry2H_BowtieMapping.sbatch
Cry2H_SAMprocessing_array.sbatch		Cry2H_SAMprocessing_array.sbatch
ExtractCleanContigs.sbatch		ExtractCleanContigs.sbatch
InferDubLoop.sbatch		InferDubLoop.sbatch
PrepareFilelist.sh		PrepareFilelist.sh
README.md		README.md
archive_train_wandb-shuffle-downsample-format.py		archive_train_wandb-shuffle-downsample-format.py
bam2fasta.sbatch		bam2fasta.sbatch
compile_contig_list.sbatch		compile_contig_list.sbatch
diamond_blastp-fm6		diamond_blastp-fm6
exec_singularity_transdecoder.sbatch		exec_singularity_transdecoder.sbatch
fasta_filter_shuf_split.sbatch		fasta_filter_shuf_split.sbatch
fetch.sbatch		fetch.sbatch
geneFind.sbatch		geneFind.sbatch
generic-prepare-tool.sh		generic-prepare-tool.sh
get-job-info.sh		get-job-info.sh
getNode.sh		getNode.sh
hifiasm-basic.sbatch		hifiasm-basic.sbatch
hifiasm-kmer_cycle.sbatch		hifiasm-kmer_cycle.sbatch
infer-basic.sbatch		infer-basic.sbatch
infer-pretor-array.sbatch		infer-pretor-array.sbatch
ipscan.sbatch		ipscan.sbatch
make_prompts.sbatch		make_prompts.sbatch
move_major_checkpoints.sbatch		move_major_checkpoints.sbatch
prepare-slurm-filelist-example.sh		prepare-slurm-filelist-example.sh
prodege-array.sbatch		prodege-array.sbatch
qkch.sbatch		qkch.sbatch
simple_hifiasm_workflow.sbatch		simple_hifiasm_workflow.sbatch
simple_stringtie.sbatch		simple_stringtie.sbatch

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