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Okada Lab

Laboratory for Cell Systems, Institute for Protein Research, Osaka University

12 followers
Japan
http://www.protein.osaka-u.ac.jp/cell_systems/index.html
@cellsystems_ipr

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biomass biomass Public

Forked from biomass-dev/biomass

A Python Framework for Modeling and Analysis of Signaling Systems

Python 1 1
pasmopy pasmopy Public

Forked from pasmopy/pasmopy

Patient-Specific Modeling in Python

Python
ASURAT ASURAT Public

Forked from keita-iida/ASURAT

ASURAT: functional annotation-driven unsupervised clustering of single-cell transcriptomes

R 1

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Showing 10 of 32 repositories

context-dependent-GRNs Public Forked from Masaaaato/context-dependent-GRNs
This repository provides reproducible code for the study by Tsutsui M. et al. (2025), focused on constructing and analyzing context-aware gene regulatory networks (GRNs) derived from biomedical literature.

okadalabipr/context-dependent-GRNs’s past year of commit activity

Jupyter Notebook 0 1 0 0 Updated Oct 4, 2025
BioMathForge Public Forked from Masaaaato/BioMathForge
BioMathForge is a comprehensive toolkit for generating, integrating, and analyzing biochemical reaction networks. It combines AI-powered reaction network generation with advanced pathway analysis to provide insights into biological systems.

okadalabipr/BioMathForge’s past year of commit activity

Python 0 1 0 0 Updated Sep 16, 2025
text2model-from-knowledge Public
Extending BioMASS to construct mathematical models from external knowledge (Arakane et al., 2024)

okadalabipr/text2model-from-knowledge’s past year of commit activity

Python 1 Apache-2.0 1 0 0 Updated Feb 8, 2025
cREscENDO Public

okadalabipr/cREscENDO’s past year of commit activity

Python 0 MIT 1 0 0 Updated Nov 28, 2024
DynProfiler Public Forked from Masaaaato/DynProfiler

okadalabipr/DynProfiler’s past year of commit activity

Jupyter Notebook 0 1 0 0 Updated Oct 9, 2024
HER2_Cellcycle Public

okadalabipr/HER2_Cellcycle’s past year of commit activity

R 0 0 0 0 Updated May 30, 2024
Haga2023 Public

okadalabipr/Haga2023’s past year of commit activity

R 1 MIT 0 0 0 Updated Jan 24, 2024
periodontitis Public

okadalabipr/periodontitis’s past year of commit activity

Python 1 0 0 0 Updated Jun 8, 2023
inflammatory-aging Public
Tabata, S. et al.

okadalabipr/inflammatory-aging’s past year of commit activity

R 0 MIT 0 0 0 Updated Mar 9, 2023
BioMASS.jl Public Forked from biomass-dev/BioMASS.jl
Julia interface to BioMASS, tailored to parameter estimation in systems biology models

okadalabipr/BioMASS.jl’s past year of commit activity

Julia 0 MIT 2 0 0 Updated Feb 28, 2023

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