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| # Workflow for running the TES compliance suite against Funnel | ||
| # | ||
| # This includes the following steps: | ||
| # 1. Build Funnel and store the resulting binary artifact | ||
| # 2. Install tes-compliance-suite and run against every version of TES simultaneously | ||
| # 3. start-report-deployment: Send a dispatch to the funnel-compliance repository to generate and publish | ||
| # the tes-compliance-suite report to https://ohsu-comp-bio.github.io/funnel-compliance/ | ||
| # | ||
| # Optionally debug via SSH | ||
| # Ref: https://fleetdm.com/engineering/tips-for-github-actions-usability | ||
| # | ||
| # To use this step uncomment and place anywhere in the build steps. The build will pause on this step and | ||
| # output a ssh address associated with the Github action worker. Helpful for debugging build steps and | ||
| # and intermediary files/artifacts. | ||
| # | ||
| # - name: "Debug: Package dependancies for tmate (CentOS)" | ||
| # run: | | ||
| # yum install -y xz | ||
| # ln -s /bin/true /bin/apt-get | ||
| # | ||
| # - name: Setup tmate session | ||
| # uses: mxschmitt/action-tmate@v3 | ||
|
|
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| name: Compliance Test | ||
|
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| on: | ||
| push: | ||
|
|
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| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Set up Go 1.x | ||
| uses: actions/setup-go@v5 | ||
| with: | ||
| go-version: 1.21 | ||
|
|
||
| - name: Check out code | ||
| uses: actions/checkout@v2 | ||
|
|
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| - name: Build | ||
| run: make build | ||
|
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| - name: Store funnel | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: funnelBin | ||
| path: funnel | ||
|
|
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| compliance: | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| version: [1.0.0, 1.1.0] | ||
| db: ["boltdb", "mongodb"] | ||
| compute: ["local"] | ||
| needs: build | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| # Required to access the 'tests/mongo.config.yml' file | ||
| # Perhaps uploading it as an artifact would be more efficient? | ||
| - name: Check out code | ||
| uses: actions/checkout@v2 | ||
|
|
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| - uses: actions/download-artifact@v3 | ||
| with: | ||
| name: funnelBin | ||
|
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| - name: Start Funnel server | ||
| run: | | ||
| touch config.yml | ||
| if [ ${{ matrix.db }} = "mongodb" ]; then | ||
| make start-mongodb | ||
| cat `pwd`/tests/mongo.config.yml >> config.yml | ||
| fi | ||
| chmod +x funnel | ||
| ./funnel server run --config `pwd`/config.yml &> funnel.logs & | ||
| - name: Run OpenAPI Test Runner | ||
| run: | | ||
| git clone https://github.com/elixir-cloud-aai/openapi-test-runner | ||
| cd openapi-test-runner | ||
| python3 -m venv venv | ||
| source venv/bin/activate | ||
| pip install -r requirements.txt | ||
| python setup.py install | ||
| openapi-test-runner report --version "${{ matrix.version }}" --server "http://localhost:8000/" | ||
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| # Credit: rhnvrm | ||
| # Adapted from: https://rohanverma.net/blog/2021/02/09/minio-github-actions/ | ||
|
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| name: S3 Integration Test | ||
|
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| on: | ||
| push: | ||
|
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| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Set up Go 1.x | ||
| uses: actions/setup-go@v5 | ||
| with: | ||
| go-version: 1.21 | ||
|
|
||
| - name: Check out code | ||
| uses: actions/checkout@v2 | ||
|
|
||
| - name: Build | ||
| run: make build | ||
|
|
||
| - name: Store funnel | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: funnelBin | ||
| path: funnel | ||
|
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| s3Test: | ||
| needs: build | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Setup minio | ||
| run: | | ||
| docker run -d -p 9000:9000 --name minio \ | ||
| -e "MINIO_ROOT_USER=minioadmin" \ | ||
| -e "MINIO_ROOT_PASSWORD=minioadmin" \ | ||
| -v /tmp/data:/data \ | ||
| -v /tmp/config:/root/.minio \ | ||
| minio/minio server /data | ||
| - uses: actions/download-artifact@v3 | ||
| with: | ||
| name: funnelBin | ||
|
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| - name: Start Funnel server | ||
| run: | | ||
| cat <<EOF > config.yml | ||
| LocalStorage: | ||
| Disabled: true | ||
| AmazonS3: | ||
| Disabled: true | ||
| GoogleStorage: | ||
| Disabled: true | ||
| HTTPStorage: | ||
| Disabled: true | ||
| FTPStorage: | ||
| Disabled: true | ||
| GenericS3: | ||
| - Disabled: false | ||
| Endpoint: "localhost:9000" | ||
| Key: "minioadmin" | ||
| Secret: "minioadmin" | ||
| EOF | ||
| chmod +x funnel | ||
| ./funnel server run --config `pwd`/config.yml &> funnel.logs & | ||
| ./funnel task run examples/s3-test.yml |
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