Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
YounessAzimzade authored Jan 17, 2025
1 parent de4b8b0 commit e9f91e3
Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -15,11 +15,11 @@ pip install git+https://github.com/ocbe-uio/pCRscore.git
This package takes cell fractions, likely from spatial proteomics, scRNA seq or estimations using deconvolution methods and clinical out come (pCR vs RD- residual disease). It is possible to provide the "Cohort" info alongside these information, otherwise the code randomly assigns the rows to discovery and validation cohorts.
# Table Schematic Example

| Sample | CellType 1 | CellType 2 | ..... | Response | Cohort |
| Sample | CellType 1 | CellType 2 | ... | Response | Cohort |
|-----------------|-----------------|----------------|-----------------|-----------------|----------------|
| TX1 | 15 | Data Row 1 Col 3|
| TX2 | Data Row 2 Col 2| Data Row 2 Col 3|
| TX3| Data Row 3 Col 2| Data Row 3 Col 3|
| TX1 | 15 | 4| ... | pCR | Discovery|
| TX2 | 0| 12| ... | RD | Validation|
| TX3| 5| 17| ... | RD | Validation|


# Expected Output
Expand Down

0 comments on commit e9f91e3

Please sign in to comment.