update environment #108
Workflow file for this run
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name: Test Notebooks | |
on: | |
push: | |
paths: | |
- notebooks/** | |
- binder/** | |
- '.github/workflows/' | |
pull_request: | |
types: [opened, synchronize] | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
linux: | |
name: Linux tests | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
steps: | |
- uses: actions/checkout@v3 | |
- name: "Install Conda environment with Micromamba" | |
uses: mamba-org/provision-with-micromamba@main | |
with: | |
cache-env: true | |
environment-file: binder/conda-linux-64.lock | |
environment-name: nsidc-tutorials | |
- name: "Verify micromamba" | |
shell: bash -l {0} | |
run: | | |
micromamba info | |
jupyter kernelspec list | |
which python | |
printenv | sort | |
- name: "Verify that libraries used in notebooks are present in the environment" | |
shell: bash -l {0} | |
run: | | |
conda list | sort | |
printenv | sort | |
find notebooks -type f -iname \*.ipynb -not -path '*\.ipynb_checkpoints/*' -not -path '*/iceflow/*' | xargs -I % python .github/workflows/scan_notebooks.py -n % | |
- name: "Setup Quarto" | |
uses: quarto-dev/quarto-actions/setup@v2 | |
with: | |
version: 1.1.251 | |
- name: "Execute notebooks with Quarto" | |
env: | |
EARTHDATA_USERNAME: ${{ secrets.EDL_USERNAME }} | |
EARTHDATA_PASSWORD: ${{ secrets.EDL_PASSWORD }} | |
shell: bash -l {0} | |
run: | | |
jupyter kernelspec list | |
find . -type f -name "*.ipynb" | xargs -I F quarto render "F" --execute --execute-daemon | |
win-osx: | |
name: Runtime (${{ matrix.os }}, micromamba) | |
runs-on: ${{ matrix.os }}-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
os: ["windows", "macos"] | |
include: | |
- os: windows | |
environment-file: binder/conda-win-64.lock | |
- os: macos | |
environment-file: binder/conda-osx-64.lock | |
steps: | |
- uses: actions/checkout@v3 | |
- name: "Install Conda environment with Micromamba" | |
uses: mamba-org/provision-with-micromamba@main | |
with: | |
cache-env: true | |
environment-file: ${{ matrix.environment-file }} | |
environment-name: nsidc-tutorials | |
- name: "Verify micromamba" | |
shell: bash -l {0} | |
run: | | |
micromamba info | |
jupyter kernelspec list | |
which python | |
printenv | sort | |