Semi-automated Robust Quantification of Lesions (SRQL; https://github.com/npnl/SRQL) Toolbox. The toolbox performs the following analysis steps: 1) a white matter intensity correction that removes healthy white matter voxels from the lesion mask, thereby making lesions slightly more robust to subjective errors; 2) an automated report of descriptive statistics on lesions for simplified comparison between or across groups, and 3) an option to perform analyses in both native and standard space to facilitate analyses in either space, or comparisons between spaces.
Updated 20170424: This build has a few bug fixes to facilitate use on remote linux servers.