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[Refactor]: bio_yr and bio_t_base are little used and should be replaceable
misc. internal calc
#626
opened Oct 4, 2024 by
Rick-Methot-NOAA
[Bug]: SPR/YPR profile and global_MSY not using correct biology vectors
benchmark - MSY
Epic: Equilibrium calcs
Groups together issues/user stories releated to equilibrium calculations
in progress
This is being worked on in a branch
very small change in variances of forecast values when including variance of DynamicB0
#618
opened Sep 16, 2024 by
iantaylor-NOAA
[Feature]: consider adding more stock-recruit functions
wishlist
request new feature; bigger than revision; OK to remove after adding to Milestone
[Feature]: One step ahead (OSA) residuals for composition data
composition
misc. output
new request
initial entry of a new request
statistics
related to logL
#604
opened Jul 8, 2024 by
Rick-Methot-NOAA
[Feature]: Cohort growth deviation added to Linf (or L2)
growth
wishlist
request new feature; bigger than revision; OK to remove after adding to Milestone
[Bug]: "inf" value in bootstrap of mean size-at-age data for ages with sample size 0
bug
Something isn't working; don't remove label after fixing
misc. output
#598
opened May 2, 2024 by
iantaylor-NOAA
2 tasks
[Feature]: add discard body weights to wtatage.ss
discard & retention
duplicate
This issue or pull request already exists
wishlist
request new feature; bigger than revision; OK to remove after adding to Milestone
[Feature]: Add full likelihood components for likelihoods, random effects and priors/penalties
hard
substantial (days-weeks) work
statistics
related to logL
wishlist
request new feature; bigger than revision; OK to remove after adding to Milestone
#553
opened Jan 12, 2024 by
Cole-Monnahan-NOAA
[Feature]: Log scale outputs
misc. output
statistics
related to logL
wishlist
request new feature; bigger than revision; OK to remove after adding to Milestone
#547
opened Jan 2, 2024 by
e-perl-NOAA
[Feature]: Apply the depletion survey (option 34) with an initial year that is not unfished
#529
opened Nov 14, 2023 by
shcaba
[Feature]: add option to input matrix of M by year & age
natural mortality
related to natural mortality
wishlist
request new feature; bigger than revision; OK to remove after adding to Milestone
#503
opened Sep 19, 2023 by
iantaylor-NOAA
[Feature]: Add generalized gamma index likelihood
statistics
related to logL
wishlist
request new feature; bigger than revision; OK to remove after adding to Milestone
[Refactor]: make use of join functions more consistent
in progress
This is being worked on in a branch
misc. internal calc
on hold
[Feature]: Add capability for seasonal offset in a CPUE catchability
new request
initial entry of a new request
time-vary parm
wishlist
request new feature; bigger than revision; OK to remove after adding to Milestone
predator functional response
predator
related to M2, predation mortality
wishlist
request new feature; bigger than revision; OK to remove after adding to Milestone
#479
opened Jul 17, 2023 by
Rick-Methot-NOAA
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