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The overarching vision of NMFS Open Science is to support scientists, developers, resource managers and policy analysts within NOAA Fisheries (NMFS) in fulfilling NOAA’s Open Science mandates: NOAA Data Strategy, DOC Open Source Code Policy, and the Federal Open Access Memo. Delivering on this ambitious vision requires actively supporting staff in transforming to reproducible workflows and work products that will emplow timely, transparent, and accessible data-driven science and decision-making. Such transformation calls for both increased collaboration across offices and regions towards shared scientific data science tasks and expanded support of open science, open data, and open source communities and initiatives within NOAA Fisheries. Cultural change requires time and new skills. NMFS Open Science works to support staff with empathy, kindness and inclusion to authentically address the barriers NMFS staff face in adopting Open Data and Open Science.

  • Support Open Science and Open Data literacy across NOAA Fisheries
  • Identify staff training needs and facilitate access to this training (via our partners, advertising events, and organizing trainings)
  • Support and amplify NMFS Open Science user groups and communities
  • Facilitate collaboration and exchange on open science tools and products
  • Identify technical and administrative barriers that staff face in transitioning to open science and take a leadership role in finding and implementing solutions

NMFS Open Science lead: Eli Holmes, PhD. NOAA Fisheries, https://www.fisheries.noaa.gov/science-data/open-science-noaa-fisheries

NMFS Open Sci Resources: VisionResource BookNMFS GitHub GuideGitHub repo templatesNMFS GitHub orgsNMFS Open Science (NOAA internal)NMFS GitHub Governance Team (NOAA internal)

Open Science at NOAA Fisheries

NMFS Openscapes NOAA Fisheries Integrated Toolbox NOAA Fisheries Integrated Modeling System NMFS R User Group
NOAA Fisheries is partnering with Openscapes to provide team-based training in reproducible workflows. Openscapes’ training helps teams transition to robust, inclusive, and enduring science- and data-driven solutions to global and time-sensitive challenges. The NOAA Fisheries Integrated Toolbox (NOAA FIT) is an interdisciplinary, web-based portal of operational tools that can be used for a variety of applications, including stock assessment modeling, forecasting, and data preparation for fish and protected species, as well as economic and ecosystem modeling. The NOAA Fisheries Integrated Modeling System is a software system designed and architected to support next-generation fisheries stock assessment, ecosystem, and socioeconomic modeling. Users and developers are welcome to submit feedback using Github issues. The NMFS R User Group supports R users across NOAA Fisheries. We host monthly meetings on topics of interest and we have an active Google Space for questions and event announcements.

Contact NMFS OpenSci admins

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  1. NMFS-R-UG NMFS-R-UG Public

    NMFS R UG website

    HTML 2

  2. GitHub-Guide GitHub-Guide Public

    GitHub Guide developed by NMFS Open Science

    Lua 4 2

  3. ResourceBook ResourceBook Public template

    On online resource book from the NMFS Open Science community

    JavaScript 2 4

  4. Contributor-Guide Contributor-Guide Public template

    NMFS Open Sci Contributor Guide

    Lua 1

Repositories

Showing 10 of 51 repositories
  • NOAAHackDays Public template

    Tutorials and content for Hackdays and Hackhours

    nmfs-opensci/NOAAHackDays’s past year of commit activity
    Jupyter Notebook 1 CC0-1.0 1 2 0 Updated Aug 5, 2024
  • container-images Public template

    The docker stack for data science applications for NOAA Fisheries

    nmfs-opensci/container-images’s past year of commit activity
    Dockerfile 8 Apache-2.0 1 12 0 Updated Jul 31, 2024
  • nmfs-opensci/test-equations’s past year of commit activity
    JavaScript 0 0 0 0 Updated Jul 26, 2024
  • r-vscode-codespaces Public template

    Setups for R in Codespaces

    nmfs-opensci/r-vscode-codespaces’s past year of commit activity
    7 MIT 1 0 0 Updated Jul 22, 2024
  • nmfs-connect Public

    Resources and issue tracker for the NMFS posit connect instance.

    nmfs-opensci/nmfs-connect’s past year of commit activity
    13 0 1 0 Updated Jul 19, 2024
  • GitHub-Guide Public

    GitHub Guide developed by NMFS Open Science

    nmfs-opensci/GitHub-Guide’s past year of commit activity
    Lua 4 2 4 0 Updated Jul 6, 2024
  • nmfs-jhub Public

    JupyterHub/RStudio set-up files and discussion

    nmfs-opensci/nmfs-jhub’s past year of commit activity
    Python 1 1 7 0 Updated Jun 26, 2024
  • EDMW-3B-tutorials Public Forked from nmfs-opensci/EDMW-EarthData-Workshop-2024

    Tutorials for - EDMW 2024 Workshop 3B

    nmfs-opensci/EDMW-3B-tutorials’s past year of commit activity
    Jupyter Notebook 0 MIT 3 0 0 Updated Jun 18, 2024
  • EDMW-EarthData-Workshop-2024 Public

    EDMW 2024 - Workshop 3B: Introduction to using earth data in the cloud for scientific workflows

    nmfs-opensci/EDMW-EarthData-Workshop-2024’s past year of commit activity
    Jupyter Notebook 4 MIT 3 3 0 Updated Jun 18, 2024
  • NMFS-R-UG Public

    NMFS R UG website

    nmfs-opensci/NMFS-R-UG’s past year of commit activity
    HTML 2 CC0-1.0 0 0 0 Updated May 28, 2024

Most used topics

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