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21 Open 54 Closed
21 Open 54 Closed
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Issues list

Is is presently possible to output the scores for optimal segmentation when using segment?
#93 opened Mar 26, 2025 by blex-max
How to resolve the issue of wgbstools mix_pat not being able to parse the hg38 genome?
#91 opened Feb 18, 2025 by MyXu0520
init_genome on hg38 generates incorrect CpG.bed.gz file.
#90 opened Jan 27, 2025 by qiangfu-eu
1
Custom annotation file to use with wgbstool convert function
#89 opened Dec 6, 2024 by almanza-d
Different coverages for different --np_tresholds for ONT data.
#87 opened Oct 22, 2024 by ljcousse
define the cell type-specific markers, as defined in the Nature paper
#83 opened Aug 22, 2024 by gyuhee0928
Bioconda integration
#80 opened Jul 4, 2024 by Manojbioinfo
Galaxy wrapper
#79 opened Jul 3, 2024 by joachimwolff
modbam reads and hardclipping
#75 opened May 30, 2024 by jts
Nanopore wgbstools vis
#69 opened Apr 18, 2024 by AzlanNI
1
beta2bed warning - incomatible (sic) with current genome reference
#67 opened Apr 5, 2024 by cb4github
Failed compiling cview
#65 opened Mar 29, 2024 by MinS1
6
Question regarding generating bigger blocks in brain .beta files wgbstools segment
#61 opened Jan 23, 2024 by DieStok
1
issue running wgbstools mix_pat
#55 opened Oct 19, 2023 by tomh1lll
bam2pat FileNotFoundError
#54 opened Oct 4, 2023 by qyJING123
1
bam2pat for nanopore data has some problem in recognising CIGARX string
#52 opened Oct 2, 2023 by vinodsinghjnu
2
bam2pat support for nanopore data
#48 opened Aug 11, 2023 by Rodcarlessi
9
Non-standard 1-based start position in bed files
#37 opened Apr 14, 2023 by GWW
convert .fractional.bw data to pat or beta
#30 opened Jan 31, 2023 by avilella
Consider more permissive license for .pat/.beta formats?
#23 opened Jan 5, 2023 by semenko
paired test for find_markers enhancement New feature or request
#14 opened Sep 30, 2022 by e-manduchi
@yonniejon
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