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@ni-lab

ni-lab

UC Berkeley

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  1. personalized-expression-benchmark personalized-expression-benchmark Public

    Evaluating genomic sequence models for explaining personalized expression variation

    Jupyter Notebook 19 2

  2. finetuning-enformer finetuning-enformer Public

    Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tuning them on personal genome and transcriptome data.

    Jupyter Notebook 7

  3. CellTypeSpecificAccessibilityPrediction CellTypeSpecificAccessibilityPrediction Public

    Jupyter Notebook 5 1

  4. guanine guanine Public

    GUANinE Benchmark Dataset and Tools

    4

  5. kidney-finemapping kidney-finemapping Public

    Python 2

  6. basenji2_uncertainty basenji2_uncertainty Public

    Jupyter Notebook 1

Repositories

Showing 6 of 6 repositories
  • finetuning-enformer Public

    Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tuning them on personal genome and transcriptome data.

    ni-lab/finetuning-enformer’s past year of commit activity
    Jupyter Notebook 7 0 1 0 Updated Feb 11, 2025
  • ni-lab/kidney-finemapping’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jan 3, 2025
  • ni-lab/CellTypeSpecificAccessibilityPrediction’s past year of commit activity
    Jupyter Notebook 5 MIT 1 0 0 Updated Jun 18, 2024
  • ni-lab/basenji2_uncertainty’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 21, 2023
  • personalized-expression-benchmark Public

    Evaluating genomic sequence models for explaining personalized expression variation

    ni-lab/personalized-expression-benchmark’s past year of commit activity
    Jupyter Notebook 19 MIT 2 5 0 Updated Dec 6, 2023
  • guanine Public

    GUANinE Benchmark Dataset and Tools

    ni-lab/guanine’s past year of commit activity
    4 0 0 0 Updated Nov 30, 2023

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