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This is how Fasta, EMBL and GenBank entries are parsed into Bio::Sequence objects:
Fasta
bioruby_aav50056_fasta_annotated by jandot on Zooomr
EMBL
bioruby_ab09071_embl_annotated by jandot on Zooomr
GenBank
bioruby_ab09071_gb_annotated by jandot on Zooomr