Version 1.1.0
Many changes to the language and the internal code warrant a new release:
- Fix CIGAR interpretation (#109) occurring when
I
is present - Call
bwa mem
so that it behaves in a deterministic way (independently of the number of threads used) - Add
include_fragments
option toorf_find()
- Add early check for column headers in
count()
- Add
sense
argument tocount()
- Add line numbers to FastQ parsing errors
- Fix
__extra_args
argument inmap()
- Add
discard_singles
function - Add
interleaved
option to fastq() load_mocat_sample
now fails ifpair.2
exists butpair.1
doesn't- Reintroduce zstd compression (after fixes upstream)