[automated] Update json files and markdown cache

nf-core · Jul 17, 2024 · a5682e5 · a5682e5
1 parent 0b79a3d
commit a5682e5
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Showing 3 changed files with 151 additions and 122 deletions.
diff --git a/.cache.tar.xz b/.cache.tar.xz
diff --git a/public/components.json b/public/components.json
@@ -5627,6 +5627,10 @@
           "name": "rnafusion",
           "version": "3.0.2"
         },
+        {
+          "name": "rnafusion",
+          "version": "3.0.2"
+        },
         {
           "name": "rnafusion",
           "version": "3.0.2"
@@ -18021,6 +18025,10 @@
           "name": "genomeassembler",
           "version": "dev"
         },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
         {
           "name": "genomeassembler",
           "version": "dev"
@@ -67803,6 +67811,10 @@
           "name": "isoseq",
           "version": "1.1.5"
         },
+        {
+          "name": "isoseq",
+          "version": "1.1.5"
+        },
         {
           "name": "isoseq",
           "version": "1.1.5"
@@ -78212,6 +78224,10 @@
           "name": "genomeassembler",
           "version": "dev"
         },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
         {
           "name": "genomeassembler",
           "version": "dev"
@@ -140750,6 +140766,19 @@
               "type": "integer",
               "description": "After UMI barcode extraction discard either R1 or R2 by setting this\nparameter to 1 or 2, respectively\n"
             }
+          },
+          {
+            "stranded_threshold": {
+              "type": "float",
+              "min": 0.5,
+              "description": "The fraction of stranded reads that must be assigned to a strandedness\nfor confident assignment. Must be at least 0.5.\n"
+            }
+          },
+          {
+            "unstranded_threshold": {
+              "type": "float",
+              "description": "The difference in fraction of stranded reads assigned to 'forward' and\n'reverse' below which a sample is classified as 'unstranded'.\n"
+            }
           }
         ],
         "output": [