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Issues list

Support for 10x Gem-X V4 libraries enhancement New feature or request
#349 opened Jul 29, 2024 by divyanshusrivastava
nextflow inspect does not work due to missing parameters bug Something isn't working
#347 opened Jul 26, 2024 by stevekm
Error while excuting emptydrops bug Something isn't working
#346 opened Jul 17, 2024 by loguille
cellranger_count.py: capture stderr and stdout enhancement New feature or request quality & consistency improve quality and reduce maintenance burden
#341 opened Jun 24, 2024 by nick-youngblut
scrnaseq will not recognize my genome file path bug Something isn't working
#339 opened Jun 20, 2024 by jjovelc
Specify cellranger version
#338 opened Jun 11, 2024 by maggiebr0wn
Trimming R1 fast files in all aligners enhancement New feature or request
#333 opened May 24, 2024 by ChristopherMancuso
cellranger-multi implementation follow-up enhancement New feature or request
#332 opened May 23, 2024 by fmalmeida
5 tasks
Error with CONCAT_H5AD bug Something isn't working
#330 opened May 17, 2024 by ashwinikumarkulkarni
Cellranger mkref resource flags incorrect bug Something isn't working
#329 opened May 13, 2024 by RPSeaman
'star' in genome configrations ignored bug Something isn't working
#327 opened May 9, 2024 by pinin4fjords
cellranger mkref with multiple species enhancement New feature or request
#319 opened Apr 16, 2024 by MaestSi
Update to the latest simpleaf enhancement New feature or request
#312 opened Mar 5, 2024 by DongzeHE
Clean up mtx conversion code enhancement New feature or request quality & consistency improve quality and reduce maintenance burden
#310 opened Mar 5, 2024 by grst
Utilize central modules for simpleaf workflow enhancement New feature or request quality & consistency improve quality and reduce maintenance burden
#296 opened Jan 23, 2024 by apeltzer
MuData conversion enhancement New feature or request
#292 opened Jan 22, 2024 by grst
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