Merge pull request #451 from genomic-medicine-sweden/fix_mem_qualifier

Fix mem qualifier
nf-core · Dec 4, 2023 · b68c72e · b68c72e
2 parents 8f98b84 + 0d2a770
commit b68c72e
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Showing 6 changed files with 35 additions and 4 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -46,6 +46,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Fixes vep starting as many instances as the square of the number of scatters. [#405](https://github.com/nf-core/raredisease/pull/405)
 - Replaced the logic where we added an arbitrary substring to keep file names unique after alignment which we then removed using a split operator, with a simple copy operation. [#425](https://github.com/nf-core/raredisease/pull/425/files)
 - Preventing a crash of rhocall annotate in the case of running four individuals whereof two are affected.
+- Fixed memory qualifier in gatk4 germlinecnvcaller and postprocessgermlinecnvcalls
 
 ### `Updated`
 

diff --git a/modules.json b/modules.json
@@ -153,7 +153,8 @@
                     "gatk4/germlinecnvcaller": {
                         "branch": "master",
                         "git_sha": "8c4542e5d421c4690cf1fa6ec729e9304763fdaf",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/gatk4/germlinecnvcaller/gatk4-germlinecnvcaller.diff"
                     },
                     "gatk4/intervallisttools": {
                         "branch": "master",
@@ -178,7 +179,8 @@
                     "gatk4/postprocessgermlinecnvcalls": {
                         "branch": "master",
                         "git_sha": "8c4542e5d421c4690cf1fa6ec729e9304763fdaf",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/gatk4/postprocessgermlinecnvcalls/gatk4-postprocessgermlinecnvcalls.diff"
                     },
                     "gatk4/preprocessintervals": {
                         "branch": "master",

diff --git a/modules/nf-core/gatk4/germlinecnvcaller/gatk4-germlinecnvcaller.diff b/modules/nf-core/gatk4/germlinecnvcaller/gatk4-germlinecnvcaller.diff
diff --git a/modules/nf-core/gatk4/germlinecnvcaller/main.nf b/modules/nf-core/gatk4/germlinecnvcaller/main.nf
diff --git a/modules/nf-core/gatk4/postprocessgermlinecnvcalls/gatk4-postprocessgermlinecnvcalls.diff b/modules/nf-core/gatk4/postprocessgermlinecnvcalls/gatk4-postprocessgermlinecnvcalls.diff
diff --git a/modules/nf-core/gatk4/postprocessgermlinecnvcalls/main.nf b/modules/nf-core/gatk4/postprocessgermlinecnvcalls/main.nf