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AWS Access Key Id

Status: Open.

#563 In nf-core/methylseq;

· liqingbioinfo opened on Aug 11, 2025

Running in <code>-stub</code> mode fails for BISMARK_SUMMARY

bugSomething isn't workingSomething isn't working

Status: Open.

#527 In nf-core/methylseq;

· bounlu opened on May 9, 2025

Pixel distance in Picard mark duplicates

bugSomething isn't workingSomething isn't working

Status: Open.

#526 In nf-core/methylseq;

· trombitomi opened on May 6, 2025

Help with Sample Sheet Preparation for Methyl-seq (S4 Illumina EM-seq)

enhancementNew feature or requestNew feature or request

Status: Open.

#510 In nf-core/methylseq;

· CHOWDHURY098 opened on Mar 19, 2025

Bismark soft clip --local_alignment True keeps L,value,value

bugSomething isn't workingSomething isn't working

Status: Open.

#472 In nf-core/methylseq;

· ioannagare opened on Nov 27, 2024

Add minimap2 as aligner option for Bismark

enhancementNew feature or requestNew feature or request

Status: Open.

#455 In nf-core/methylseq;

· FelixKrueger opened on Nov 12, 2024

Adding --maxVariantFrac and --minOppositeDepth to MethylDackel (Bwameth option)

enhancementNew feature or requestNew feature or request

Status: Open.

#404 In nf-core/methylseq;

· LucaZanella15 opened on Jun 18, 2024

AS-XS tag missing

enhancementNew feature or requestNew feature or request

Status: Open.

#397 In nf-core/methylseq;

· AndreiWCansor opened on May 1, 2024

Specify additional "genomes" of spike-in controls for downstream calculation of bisulfite conversion efficiency

enhancementNew feature or requestNew feature or request

Status: Open.

#394 In nf-core/methylseq;

· pdemko opened on Apr 1, 2024

--rrbs and --emseq parameter and argument usage

enhancementNew feature or requestNew feature or request

Status: Open.

#389 In nf-core/methylseq;

· deep-buddingcoder opened on Mar 20, 2024

Support for NuGEN Ovation RRBS

enhancementNew feature or requestNew feature or request

Status: Open.

#376 In nf-core/methylseq;

· jma1991 opened on Jan 19, 2024

Add <code>asTair</code>/<code>rastair</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#374 In nf-core/methylseq;

· bounlu opened on Jan 16, 2024