Update rnaseq eddie.config

add process specific params for fastqc to deal with new modules use of Java memeory assignment via Xmx
nf-core · Dec 4, 2024 · 506a3d4 · 506a3d4
1 parent 304c9e4
commit 506a3d4
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/conf/pipeline/rnaseq/eddie.config b/conf/pipeline/rnaseq/eddie.config
@@ -3,4 +3,8 @@ process {
     withName: 'PICARD_MARKDUPLICATES|QUALIMAP_RNASEQ|FASTQC|BBMAP_BBSPLIT' {
         clusterOptions = { "-l h_vmem=${(task.memory + 4.GB).bytes / task.cpus}" }
     }
+    withName: "NFCORE_RNASEQ:RNASEQ:FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS:FASTQ_FASTQC_UMITOOLS_TRIMGALORE:FASTQC"{
+		cpus=5
+		memory=24.GB
+	}
 }