Nextflow stdout:

ERROR ~ Error executing process > 'NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (pb2)'

Caused by:
  Process `NFCORE_AMPLISEQ:AMPLISEQ:FASTQC (pb2)` terminated with an error exit status (1)


Command executed:

  printf "%s %s\n" pb2.fastq.gz pb2.gz | while read old_name new_name; do
      [ -f "${new_name}" ] || ln -s $old_name $new_name
  done
  
  fastqc \
      --quiet \
      --threads 4 \
      --memory 3840 \
      pb2.gz
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_AMPLISEQ:AMPLISEQ:FASTQC":
      fastqc: $( fastqc --version | sed '/FastQC v/!d; s/.*v//' )
  END_VERSIONS

Command exit status:
  1

Command output:
  application/gzip

Command error:
  application/gzip
  Failed to process file pb2.gz
  uk.ac.babraham.FastQC.Sequence.SequenceFormatException: Ran out of data in the middle of a fastq entry.  Your file is probably truncated
  	at uk.ac.babraham.FastQC.Sequence.FastQFile.readNext(FastQFile.java:187)
  	at uk.ac.babraham.FastQC.Sequence.FastQFile.next(FastQFile.java:129)
  	at uk.ac.babraham.FastQC.Analysis.AnalysisRunner.run(AnalysisRunner.java:77)
  	at java.base/java.lang.Thread.run(Thread.java:833)

Work dir:
  /home/runner/work/ampliseq/ampliseq/.nf-test/tests/192be031b31e9cc19190a9d9f4a97247/work/46/57c3b86990fce0f7599c55e84ea5fa

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`

 -- Check '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/192be031b31e9cc19190a9d9f4a97247/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/192be031b31e9cc19190a9d9f4a97247/meta/nextflow.log' file for details
Nextflow stderr:

Nextflow 24.10.0 is available - Please consider updating your version to it