Update modules #92

matthdsm · 2024-07-16T07:37:55Z

PR checklist

This comment contains a description of changes (with reason).
If you've fixed a bug or added code that should be tested, add tests!
If you've added a new tool - have you followed the pipeline conventions in the contribution docs
Make sure your code lints (nf-core lint).
Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
Usage Documentation in docs/usage.md is updated.
Output Documentation in docs/output.md is updated.
CHANGELOG.md is updated.
README.md is updated (including new tool citations and authors/contributors).

matthdsm added 13 commits July 10, 2024 15:05

update samtools/cat

a1a7434

update samtools/cat

16c600a

update samtools/collatefastq

3da46a3

update samtools/convert

a251ee8

update samtools/coverage

3f3cf7a

update and patch remaining samtools modules

c417be0

bump multiqc

e3cc80c

bump md5sum

23fbf9f

fix bowtie2 meta

5fef4bf

fix bwa meta

946d125

fix cat/fastq meta and tests

7fd6c48

bump fastp

486d382

update modules.json

f08a45d

matthdsm changed the base branch from main to dev July 16, 2024 07:38

Research and others added 3 commits July 16, 2024 08:45

update snapshots

459946c

bump every module

ac0019a

fix fastq_aligned_cram tests

066f437

nvnieuwk approved these changes Aug 14, 2024

View reviewed changes

nvnieuwk merged commit 548af67 into dev Aug 14, 2024
17 of 18 checks passed

nvnieuwk deleted the bump/samtools branch August 14, 2024 08:21