reintroduce nf-core lint support + update all modules #804
nvnieuwkAnnotations
60 errors and 32 warnings
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Run nf-test with vcf_validate_small_variants-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_extract_relate_somalier-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with input_split_bedtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_upd_updio-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_prepare_samtools_bedtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_gvcfs-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_gvcfs-24.04.0
Process completed with exit code 1.
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Run nf-test with vcf_upd_updio-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with vcf_ped_rtgtools-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with vcf_validate_small_variants-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with vcf_extract_relate_somalier-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with vcf_extract_relate_somalier-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_extract_relate_somalier-latest-everything
The operation was canceled.
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Run nf-test with vcf_annotation-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with vcf_annotation-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_call_vardictjava-24.04.0
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with cram_call_vardictjava-24.04.0
The operation was canceled.
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Run nf-test with cram_call_vardictjava-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_ped_rtgtools-24.04.0
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with vcf_ped_rtgtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_default-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with pipeline_default-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_variations2-24.04.0
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with pipeline_variations2-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_variations2-24.04.0
The operation was canceled.
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Run nf-test with cram_call_genotype_gatk4-24.04.0
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with cram_call_genotype_gatk4-24.04.0
The operation was canceled.
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Run nf-test with cram_call_genotype_gatk4-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_variations-24.04.0
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with pipeline_variations-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_call_vardictjava-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with cram_call_vardictjava-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_call_vardictjava-latest-everything
The operation was canceled.
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Run nf-test with pipeline_callers-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with pipeline_callers-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with input_split_bedtools-24.04.0
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with input_split_bedtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with input_split_bedtools-24.04.0
The operation was canceled.
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Run nf-test with pipeline_variations2-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with pipeline_variations2-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_annotation-24.04.0
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with vcf_annotation-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_annotation-24.04.0
The operation was canceled.
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Run nf-test with pipeline_default-24.04.0
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with pipeline_default-24.04.0
The operation was canceled.
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Run nf-test with pipeline_default-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_gvcfs-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with pipeline_gvcfs-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_call_genotype_gatk4-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with cram_call_genotype_gatk4-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with cram_call_genotype_gatk4-latest-everything
The operation was canceled.
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Run nf-test with pipeline_variations-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with pipeline_variations-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_variations-latest-everything
The operation was canceled.
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Run nf-test with pipeline_callers-24.04.0
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with pipeline_callers-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_callers-24.04.0
The operation was canceled.
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Run nf-test with cram_prepare_samtools_bedtools-latest-everything
The job was canceled because "_24_04_0_pipeline_gvcfs" failed.
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Run nf-test with cram_prepare_samtools_bedtools-latest-everything
The operation was canceled.
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Run nf-test with cram_prepare_samtools_bedtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_validate_small_variants-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Run nf-test with vcf_validate_small_variants-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_extract_relate_somalier-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Run nf-test with vcf_extract_relate_somalier-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with input_split_bedtools-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Run nf-test with input_split_bedtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_upd_updio-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Run nf-test with vcf_upd_updio-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_prepare_samtools_bedtools-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Run nf-test with cram_prepare_samtools_bedtools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_gvcfs-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: mikepenz/action-junit-report@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Run nf-test with pipeline_gvcfs-24.04.0
No files were found with the provided path: .nf-test/. No artifacts will be uploaded.
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Run nf-test with pipeline_gvcfs-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_extract_relate_somalier-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_annotation-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_call_vardictjava-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_ped_rtgtools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_default-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_variations2-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_call_genotype_gatk4-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_variations-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_call_vardictjava-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_callers-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with input_split_bedtools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_variations2-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_annotation-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_default-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_gvcfs-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_call_genotype_gatk4-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_variations-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_callers-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with cram_prepare_samtools_bedtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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