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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 268 129

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 292 163

Repositories

Showing 10 of 89 repositories
  • ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    nextstrain/ncov’s past year of commit activity
    Python 1,354 MIT 403 71 25 Updated Oct 1, 2024
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 88 AGPL-3.0 49 75 (2 issues need help) 11 Updated Oct 1, 2024
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox’s past year of commit activity
    Python 42 MIT 19 23 9 Updated Sep 30, 2024
  • cli Public

    The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

    nextstrain/cli’s past year of commit activity
    Python 27 MIT 20 61 2 Updated Sep 30, 2024
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 44 26 25 4 Updated Sep 30, 2024
  • forecasts-ncov Public

    SARS-CoV-2 variant growth rates and frequency forecasts

    nextstrain/forecasts-ncov’s past year of commit activity
    Python 7 2 10 6 Updated Sep 30, 2024
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 268 AGPL-3.0 129 232 (1 issue needs help) 59 Updated Sep 30, 2024
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 292 AGPL-3.0 163 228 (4 issues need help) 49 Updated Sep 30, 2024
  • WNV Public

    the repository used to build West Nile Virus for nextstrain

    nextstrain/WNV’s past year of commit activity
    Python 2 0 2 0 Updated Sep 28, 2024
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 19 9 Updated Sep 26, 2024
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