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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 406

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 269 131

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 300 166

Repositories

Showing 10 of 94 repositories
  • conda-base Public

    Conda package build for nextstrain-base

    nextstrain/conda-base’s past year of commit activity
    Shell 1 1 9 2 Updated Apr 16, 2025
  • zika Public

    Nextstrain build for Zika virus

    nextstrain/zika’s past year of commit activity
    Python 8 10 4 2 Updated Apr 16, 2025
  • nextstrain-walkthrough Public

    Workshop for VEME 2022: Real-time tracking of pathogen evolution using Nextstrain

    nextstrain/nextstrain-walkthrough’s past year of commit activity
    4 MIT 1 0 0 Updated Apr 16, 2025
  • hmpv Public

    Human metapneumovirus pathogen build

    nextstrain/hmpv’s past year of commit activity
    Python 0 0 8 0 Updated Apr 16, 2025
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data’s past year of commit activity
    Python 33 27 9 16 Updated Apr 16, 2025
  • mumps Public

    Nextstrain build for mumps virus

    nextstrain/mumps’s past year of commit activity
    Python 2 5 7 2 Updated Apr 16, 2025
  • nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    nextstrain/nextclade’s past year of commit activity
    Rust 229 MIT 60 111 (31 issues need help) 19 Updated Apr 16, 2025
  • auspice.us Public
    nextstrain/auspice.us’s past year of commit activity
    JavaScript 13 8 4 0 Updated Apr 15, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 269 AGPL-3.0 131 220 (1 issue needs help) 34 Updated Apr 15, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 49 28 27 4 Updated Apr 15, 2025
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