funannotate v0.2.11

• fix bug where tRNA predictions lacking 'product' annotation would cause funannotate annotate to die
• build in check for fasta header length for funannotate predict, max is 16 characters for GenBank format

funannotate v0.2.10

• bug fix for funannotate predict and an empty --transcript_evidence option
• bug fix for NCBI error parsing in funannotate predict

funannotate v0.2.8

• fix bug that crashed checking input files for --protein_evidence or --transcript_evidence if passing multiple files separated by a ,
• Add backbone secondary metabolism summary to funannotate compare

funannotate v0.2.7

• added summary of transcription factors to funannotate compare based off of InterProScan domain hits.
• a few minor bug fixes

funannotate v0.2.6

• bug fix on some NCBI genbank files where protein ID/locus ID aren't entered in the way that funannotate expects them
• bug fix for funannotate predict when generating augustus hints files

funannotate v0.2.5

• fix bug in processing antismash results, a typo on file handle
• increase signalp chunks to 40 to further reduce memory consumption
• fix naming of signalp graph and orientation of x-axis names

funannotate v0.2.4

• fix memory problem of running whole genome through signalp, now splits into 20 chunks, should result in < 200 proteins per run
• work around for BUSCO/Augustus training problem if augustus species set to generic
• fix typo in v0.2.3

funannotate v0.2.2

• yet another fix for goatools changing format. goatools v0.6.4 is now required, previous versions are not supported
• Added signalp search to funanntoate annotate and funannotate compare. Since signalp has to be manually installed and configured, it will only be run if the program is detected and won't be listed as a dependency.

funannotate v0.2.1

• fix another bug due to goatools format changes

funannotate v0.1.9

• bug fix for GO enrichment using goatools as the developers changed the input parameters for the enrichment script
• funannotate predict now uses hints for augustus prediction. hints are generated from BLAT transcript alignments from the --transcript_evidence option and protein hints are generated from exonerate alignments from the --protein_evidence option. The weights file from evidence modeler was adjusted slightly to account for better predictions from augustus.