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revert exercise to Biocontainers
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pinin4fjords authored Oct 2, 2024
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Expand Up @@ -674,7 +674,7 @@ Nextflow automatically sets up an environment for the given package names listed

!!! question "Exercise"

The tools `fastqc` and `salmon` are both available in Seqera Containers (`community.wave.seqera.io/library/fastqc:0.12.1--5cfd0f3cb6760c42` and `community.wave.seqera.io/library/salmon:1.10.3--482593b6cd04c9b7`, respectively). Add the appropriate `container` directives to the `FASTQC` and `QUANTIFICATION` processes in `script5.nf` to use Seqera Containers instead of the container image you have been using in this training.
The tools `fastqc` and `salmon` are both available in Biocontainers (`biocontainers/fastqc:v0.11.5` and `quay.io/biocontainers/salmon:1.7.0--h84f40af_0`, respectively). Add the appropriate `container` directives to the `FASTQC` and `QUANTIFICATION` processes in `script5.nf` to use Seqera Containers instead of the container image you have been using in this training.

!!! tip "Hint"

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