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Add SDM-PSI Estimator#591

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tsalo wants to merge 61 commits intoneurostuff:mainneurostuff/NiMARE:mainfrom tsalo:sdmtsalo/NiMARE:sdmCopy head branch name to clipboard

+1,768-3

Commits

Commits on Nov 18, 2020

• Start working on SDM anisotropic kernel.

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Commits on Oct 27, 2021

• Merge branch 'neurostuff:main' into sdm

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Commits on Oct 29, 2021

• Run black and improve docstring.

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Commits on Dec 19, 2021

• Merge branch 'main' into sdm

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• Start looking at the Albajes-Eizagirre et al. (2019) supplement.

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Commits on Dec 20, 2021

• Improve documentation a bit.

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Commits on Dec 21, 2021

• Use PyMARE instead of metafor's rma.

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• Get the permutation functions working.

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• Draft hedges g function.

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• Use formulae from wikipedia for hedges' g.

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• Add empty functions for calculating Hedges g to transforms.

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• Try improving Hedges g functions.

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Commits on Dec 22, 2021

• Add simulation code (thanks @JulioAPeraza!).

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Commits on Jan 14, 2022

• Get the simulations working.

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• Support different sample sizes per study.

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Commits on Jan 15, 2022

• I think the single-voxel imputation makes sense now.

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• Lots of progress on the simulations.

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• Update sdm.py

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Commits on Jan 16, 2022

• Document some stuff.

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• Import stuff.

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• Update setup.cfg

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• Update sdm.py

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• Some notes.

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• Fix the simulated data.

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• Documentation improvements.

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• Update sdm.py

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Commits on Jan 18, 2022

• Just use the masker to simulate the subject data.

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Commits on Mar 3, 2022

• Merge branch 'main' into sdm

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• Remove supplement R values.

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• Update sdm.py

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• Run black.

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Commits on Mar 8, 2022

• Merge branch 'main' into sdm

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• Update sdm.py

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Commits on Mar 30, 2022

• Test out the simulation method.

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• Keep working on the simulation code.

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• Add some tests.

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• Update sdm.py

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• docstrings.

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Commits on May 11, 2022

• Try writing _calculate_hedges_maps.

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• Run black.

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• Merge remote-tracking branch 'upstream/main' into sdm

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• Update.

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• Update.

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• Move some functions.

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• More.

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Commits on May 13, 2022

• Update sdm.py

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Commits on May 14, 2022

• Update setup.cfg

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Commits on May 16, 2022

• Update sdm.py

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• Update sdm.py

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Commits on May 17, 2022

• Update test_sdm.py

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• Update sdm.py

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• Update sdm.py

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• Update test_sdm.py

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Commits on May 18, 2022

• Minor stuff from last night.

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• More stuff.

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Commits on May 19, 2022

• Update.

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Commits on May 23, 2022

• Just use PyMARE for the heterogeneity stats.

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Commits on May 24, 2022

• Update sdm.py

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• Update sdm.py

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Commits on Aug 12, 2022

• Merge remote-tracking branch 'upstream/main' into sdm

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• [skip ci] Update sdm.py.

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